add all mucs files

egs/mucs/ASR/conformer_ctc/ali.py

@@ -0,0 +1,395 @@
+#!/usr/bin/env python3
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+"""
+Usage:
+    ./conformer_ctc/ali.py \
+            --exp-dir ./conformer_ctc/exp \
+            --lang-dir ./data/lang_bpe_500 \
+            --epoch 20 \
+            --avg 10 \
+            --max-duration 300 \
+            --dataset train-clean-100 \
+            --out-dir data/ali
+"""
+
+import argparse
+import logging
+from pathlib import Path
+
+import k2
+import numpy as np
+import torch
+from asr_datamodule import LibriSpeechAsrDataModule
+from conformer import Conformer
+from lhotse import CutSet
+from lhotse.features.io import FeaturesWriter, NumpyHdf5Writer
+
+from icefall.bpe_graph_compiler import BpeCtcTrainingGraphCompiler
+from icefall.checkpoint import average_checkpoints, load_checkpoint
+from icefall.decode import one_best_decoding
+from icefall.env import get_env_info
+from icefall.lexicon import Lexicon
+from icefall.utils import (
+    AttributeDict,
+    encode_supervisions,
+    get_alignments,
+    setup_logger,
+)
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--epoch",
+        type=int,
+        default=34,
+        help="It specifies the checkpoint to use for decoding."
+        "Note: Epoch counts from 0.",
+    )
+    parser.add_argument(
+        "--avg",
+        type=int,
+        default=20,
+        help="Number of checkpoints to average. Automatically select "
+        "consecutive checkpoints before the checkpoint specified by "
+        "'--epoch'. ",
+    )
+
+    parser.add_argument(
+        "--lang-dir",
+        type=str,
+        default="data/lang_bpe_500",
+        help="The lang dir",
+    )
+
+    parser.add_argument(
+        "--exp-dir",
+        type=str,
+        default="conformer_ctc/exp",
+        help="The experiment dir",
+    )
+
+    parser.add_argument(
+        "--out-dir",
+        type=str,
+        required=True,
+        help="""Output directory.
+        It contains 3 generated files:
+
+        - labels_xxx.h5
+        - aux_labels_xxx.h5
+        - librispeech_cuts_xxx.jsonl.gz
+
+        where xxx is the value of `--dataset`. For instance, if
+        `--dataset` is `train-clean-100`, it will contain 3 files:
+
+        - `labels_train-clean-100.h5`
+        - `aux_labels_train-clean-100.h5`
+        - `librispeech_cuts_train-clean-100.jsonl.gz`
+
+        Note: Both labels_xxx.h5 and aux_labels_xxx.h5 contain framewise
+        alignment. The difference is that labels_xxx.h5 contains repeats.
+        """,
+    )
+
+    parser.add_argument(
+        "--dataset",
+        type=str,
+        required=True,
+        help="""The name of the dataset to compute alignments for.
+        Possible values are:
+            - test-clean.
+            - test-other
+            - train-clean-100
+            - train-clean-360
+            - train-other-500
+            - dev-clean
+            - dev-other
+        """,
+    )
+    return parser
+
+
+def get_params() -> AttributeDict:
+    params = AttributeDict(
+        {
+            "lm_dir": Path("data/lm"),
+            "feature_dim": 80,
+            "nhead": 8,
+            "attention_dim": 512,
+            "subsampling_factor": 4,
+            # Set it to 0 since attention decoder
+            # is not used for computing alignments
+            "num_decoder_layers": 0,
+            "vgg_frontend": False,
+            "use_feat_batchnorm": True,
+            "output_beam": 10,
+            "use_double_scores": True,
+            "env_info": get_env_info(),
+        }
+    )
+    return params
+
+
+def compute_alignments(
+    model: torch.nn.Module,
+    dl: torch.utils.data.DataLoader,
+    labels_writer: FeaturesWriter,
+    aux_labels_writer: FeaturesWriter,
+    params: AttributeDict,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+) -> CutSet:
+    """Compute the framewise alignments of a dataset.
+
+    Args:
+      model:
+        The neural network model.
+      dl:
+        Dataloader containing the dataset.
+      params:
+        Parameters for computing alignments.
+      graph_compiler:
+        It converts token IDs to decoding graphs.
+    Returns:
+      Return a CutSet. Each cut has two custom fields: labels_alignment
+      and aux_labels_alignment, containing framewise alignments information.
+      Both are of type `lhotse.array.TemporalArray`. The difference between
+      the two alignments is that `labels_alignment` contain repeats.
+    """
+    try:
+        num_batches = len(dl)
+    except TypeError:
+        num_batches = "?"
+    num_cuts = 0
+
+    device = graph_compiler.device
+    cuts = []
+    for batch_idx, batch in enumerate(dl):
+        feature = batch["inputs"]
+
+        # at entry, feature is [N, T, C]
+        assert feature.ndim == 3
+        feature = feature.to(device)
+
+        supervisions = batch["supervisions"]
+        cut_list = supervisions["cut"]
+
+        for cut in cut_list:
+            assert len(cut.supervisions) == 1, f"{len(cut.supervisions)}"
+
+        nnet_output, encoder_memory, memory_mask = model(feature, supervisions)
+        # nnet_output is [N, T, C]
+        supervision_segments, texts = encode_supervisions(
+            supervisions, subsampling_factor=params.subsampling_factor
+        )
+        # we need also to sort cut_ids as encode_supervisions()
+        # reorders "texts".
+        # In general, new2old is an identity map since lhotse sorts the returned
+        # cuts by duration in descending order
+        new2old = supervision_segments[:, 0].tolist()
+
+        cut_list = [cut_list[i] for i in new2old]
+
+        token_ids = graph_compiler.texts_to_ids(texts)
+        decoding_graph = graph_compiler.compile(token_ids)
+
+        dense_fsa_vec = k2.DenseFsaVec(
+            nnet_output,
+            supervision_segments,
+            allow_truncate=params.subsampling_factor - 1,
+        )
+
+        lattice = k2.intersect_dense(
+            decoding_graph,
+            dense_fsa_vec,
+            params.output_beam,
+        )
+
+        best_path = one_best_decoding(
+            lattice=lattice,
+            use_double_scores=params.use_double_scores,
+        )
+
+        labels_ali = get_alignments(best_path, kind="labels")
+        aux_labels_ali = get_alignments(best_path, kind="aux_labels")
+        assert len(labels_ali) == len(aux_labels_ali) == len(cut_list)
+        for cut, labels, aux_labels in zip(cut_list, labels_ali, aux_labels_ali):
+            cut.labels_alignment = labels_writer.store_array(
+                key=cut.id,
+                value=np.asarray(labels, dtype=np.int32),
+                # frame shift is 0.01s, subsampling_factor is 4
+                frame_shift=0.04,
+                temporal_dim=0,
+                start=0,
+            )
+            cut.aux_labels_alignment = aux_labels_writer.store_array(
+                key=cut.id,
+                value=np.asarray(aux_labels, dtype=np.int32),
+                # frame shift is 0.01s, subsampling_factor is 4
+                frame_shift=0.04,
+                temporal_dim=0,
+                start=0,
+            )
+
+        cuts += cut_list
+
+        num_cuts += len(cut_list)
+
+        if batch_idx % 100 == 0:
+            batch_str = f"{batch_idx}/{num_batches}"
+
+            logging.info(f"batch {batch_str}, cuts processed until now is {num_cuts}")
+
+    return CutSet.from_cuts(cuts)
+
+
+@torch.no_grad()
+def main():
+    parser = get_parser()
+    LibriSpeechAsrDataModule.add_arguments(parser)
+    args = parser.parse_args()
+
+    args.enable_spec_aug = False
+    args.enable_musan = False
+    args.return_cuts = True
+    args.concatenate_cuts = False
+
+    params = get_params()
+    params.update(vars(args))
+
+    setup_logger(f"{params.exp_dir}/log-ali")
+
+    logging.info(f"Computing alignments for {params.dataset} - started")
+    logging.info(params)
+
+    out_dir = Path(params.out_dir)
+    out_dir.mkdir(exist_ok=True)
+
+    out_labels_ali_filename = out_dir / f"labels_{params.dataset}.h5"
+    out_aux_labels_ali_filename = out_dir / f"aux_labels_{params.dataset}.h5"
+    out_manifest_filename = out_dir / f"librispeech_cuts_{params.dataset}.jsonl.gz"
+
+    for f in (
+        out_labels_ali_filename,
+        out_aux_labels_ali_filename,
+        out_manifest_filename,
+    ):
+        if f.exists():
+            logging.info(f"{f} exists - skipping")
+            return
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", 0)
+    logging.info(f"device: {device}")
+
+    graph_compiler = BpeCtcTrainingGraphCompiler(
+        params.lang_dir,
+        device=device,
+        sos_token="<sos/eos>",
+        eos_token="<sos/eos>",
+    )
+
+    logging.info("About to create model")
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=params.vgg_frontend,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+    model.to(device)
+
+    if params.avg == 1:
+        load_checkpoint(
+            f"{params.exp_dir}/epoch-{params.epoch}.pt", model, strict=False
+        )
+    else:
+        start = params.epoch - params.avg + 1
+        filenames = []
+        for i in range(start, params.epoch + 1):
+            if start >= 0:
+                filenames.append(f"{params.exp_dir}/epoch-{i}.pt")
+        logging.info(f"averaging {filenames}")
+        model.load_state_dict(
+            average_checkpoints(filenames, device=device), strict=False
+        )
+
+    model.eval()
+
+    librispeech = LibriSpeechAsrDataModule(args)
+    if params.dataset == "test-clean":
+        test_clean_cuts = librispeech.test_clean_cuts()
+        dl = librispeech.test_dataloaders(test_clean_cuts)
+    elif params.dataset == "test-other":
+        test_other_cuts = librispeech.test_other_cuts()
+        dl = librispeech.test_dataloaders(test_other_cuts)
+    elif params.dataset == "train-clean-100":
+        train_clean_100_cuts = librispeech.train_clean_100_cuts()
+        dl = librispeech.train_dataloaders(train_clean_100_cuts)
+    elif params.dataset == "train-clean-360":
+        train_clean_360_cuts = librispeech.train_clean_360_cuts()
+        dl = librispeech.train_dataloaders(train_clean_360_cuts)
+    elif params.dataset == "train-other-500":
+        train_other_500_cuts = librispeech.train_other_500_cuts()
+        dl = librispeech.train_dataloaders(train_other_500_cuts)
+    elif params.dataset == "dev-clean":
+        dev_clean_cuts = librispeech.dev_clean_cuts()
+        dl = librispeech.valid_dataloaders(dev_clean_cuts)
+    else:
+        assert params.dataset == "dev-other", f"{params.dataset}"
+        dev_other_cuts = librispeech.dev_other_cuts()
+        dl = librispeech.valid_dataloaders(dev_other_cuts)
+
+    logging.info(f"Processing {params.dataset}")
+    with NumpyHdf5Writer(out_labels_ali_filename) as labels_writer:
+        with NumpyHdf5Writer(out_aux_labels_ali_filename) as aux_labels_writer:
+            cut_set = compute_alignments(
+                model=model,
+                dl=dl,
+                labels_writer=labels_writer,
+                aux_labels_writer=aux_labels_writer,
+                params=params,
+                graph_compiler=graph_compiler,
+            )
+
+    cut_set.to_file(out_manifest_filename)
+
+    logging.info(
+        f"For dataset {params.dataset}, its alignments with repeats are "
+        f"saved to {out_labels_ali_filename}, the alignments without repeats "
+        f"are saved to {out_aux_labels_ali_filename}, and the cut manifest "
+        f"file is {out_manifest_filename}. Number of cuts: {len(cut_set)}"
+    )
+
+
+torch.set_num_threads(1)
+torch.set_num_interop_threads(1)
+
+if __name__ == "__main__":
+    main()

egs/mucs/ASR/conformer_ctc/asr_datamodule.py

@@ -0,0 +1,473 @@
+# Copyright      2021  Piotr Żelasko
+# Copyright      2022  Xiaomi Corporation     (Author: Mingshuang Luo)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import argparse
+import inspect
+import logging
+from functools import lru_cache
+from pathlib import Path
+from typing import Any, Dict, Optional
+
+import torch
+from lhotse import CutSet, Fbank, FbankConfig, load_manifest, load_manifest_lazy
+from lhotse.dataset import (  # noqa F401 for PrecomputedFeatures
+    CutConcatenate,
+    CutMix,
+    DynamicBucketingSampler,
+    K2SpeechRecognitionDataset,
+    PrecomputedFeatures,
+    SingleCutSampler,
+    SpecAugment,
+)
+from lhotse.dataset.input_strategies import (  # noqa F401 For AudioSamples
+    AudioSamples,
+    OnTheFlyFeatures,
+)
+from lhotse.utils import fix_random_seed
+from torch.utils.data import DataLoader
+
+from icefall.utils import str2bool
+
+
+class _SeedWorkers:
+    def __init__(self, seed: int):
+        self.seed = seed
+
+    def __call__(self, worker_id: int):
+        fix_random_seed(self.seed + worker_id)
+
+
+class LibriSpeechAsrDataModule:
+    """
+    DataModule for k2 ASR experiments.
+    It assumes there is always one train and valid dataloader,
+    but there can be multiple test dataloaders (e.g. LibriSpeech test-clean
+    and test-other).
+
+    It contains all the common data pipeline modules used in ASR
+    experiments, e.g.:
+    - dynamic batch size,
+    - bucketing samplers,
+    - cut concatenation,
+    - augmentation,
+    - on-the-fly feature extraction
+
+    This class should be derived for specific corpora used in ASR tasks.
+    """
+
+    def __init__(self, args: argparse.Namespace):
+        self.args = args
+
+    @classmethod
+    def add_arguments(cls, parser: argparse.ArgumentParser):
+        group = parser.add_argument_group(
+            title="ASR data related options",
+            description="These options are used for the preparation of "
+            "PyTorch DataLoaders from Lhotse CutSet's -- they control the "
+            "effective batch sizes, sampling strategies, applied data "
+            "augmentations, etc.",
+        )
+        group.add_argument(
+            "--full-libri",
+            type=str2bool,
+            default=True,
+            help="When enabled, use 960h LibriSpeech. Otherwise, use 100h subset.",
+        )
+        group.add_argument(
+            "--manifest-dir",
+            type=Path,
+            default=Path("data/fbank"),
+            help="Path to directory with train/valid/test cuts.",
+        )
+        group.add_argument(
+            "--max-duration",
+            type=int,
+            default=200.0,
+            help="Maximum pooled recordings duration (seconds) in a "
+            "single batch. You can reduce it if it causes CUDA OOM.",
+        )
+        group.add_argument(
+            "--bucketing-sampler",
+            type=str2bool,
+            default=True,
+            help="When enabled, the batches will come from buckets of "
+            "similar duration (saves padding frames).",
+        )
+        group.add_argument(
+            "--num-buckets",
+            type=int,
+            default=30,
+            help="The number of buckets for the DynamicBucketingSampler"
+            "(you might want to increase it for larger datasets).",
+        )
+        group.add_argument(
+            "--concatenate-cuts",
+            type=str2bool,
+            default=False,
+            help="When enabled, utterances (cuts) will be concatenated "
+            "to minimize the amount of padding.",
+        )
+        group.add_argument(
+            "--duration-factor",
+            type=float,
+            default=1.0,
+            help="Determines the maximum duration of a concatenated cut "
+            "relative to the duration of the longest cut in a batch.",
+        )
+        group.add_argument(
+            "--gap",
+            type=float,
+            default=1.0,
+            help="The amount of padding (in seconds) inserted between "
+            "concatenated cuts. This padding is filled with noise when "
+            "noise augmentation is used.",
+        )
+        group.add_argument(
+            "--on-the-fly-feats",
+            type=str2bool,
+            default=False,
+            help="When enabled, use on-the-fly cut mixing and feature "
+            "extraction. Will drop existing precomputed feature manifests "
+            "if available.",
+        )
+        group.add_argument(
+            "--shuffle",
+            type=str2bool,
+            default=True,
+            help="When enabled (=default), the examples will be "
+            "shuffled for each epoch.",
+        )
+        group.add_argument(
+            "--drop-last",
+            type=str2bool,
+            default=True,
+            help="Whether to drop last batch. Used by sampler.",
+        )
+        group.add_argument(
+            "--return-cuts",
+            type=str2bool,
+            default=True,
+            help="When enabled, each batch will have the "
+            "field: batch['supervisions']['cut'] with the cuts that "
+            "were used to construct it.",
+        )
+
+        group.add_argument(
+            "--num-workers",
+            type=int,
+            default=2,
+            help="The number of training dataloader workers that "
+            "collect the batches.",
+        )
+
+        group.add_argument(
+            "--enable-spec-aug",
+            type=str2bool,
+            default=True,
+            help="When enabled, use SpecAugment for training dataset.",
+        )
+
+        group.add_argument(
+            "--spec-aug-time-warp-factor",
+            type=int,
+            default=80,
+            help="Used only when --enable-spec-aug is True. "
+            "It specifies the factor for time warping in SpecAugment. "
+            "Larger values mean more warping. "
+            "A value less than 1 means to disable time warp.",
+        )
+
+        group.add_argument(
+            "--enable-musan",
+            type=str2bool,
+            default=True,
+            help="When enabled, select noise from MUSAN and mix it"
+            "with training dataset. ",
+        )
+
+        group.add_argument(
+            "--input-strategy",
+            type=str,
+            default="PrecomputedFeatures",
+            help="AudioSamples or PrecomputedFeatures",
+        )
+
+    def train_dataloaders(
+        self,
+        cuts_train: CutSet,
+        sampler_state_dict: Optional[Dict[str, Any]] = None,
+    ) -> DataLoader:
+        """
+        Args:
+          cuts_train:
+            CutSet for training.
+          sampler_state_dict:
+            The state dict for the training sampler.
+        """
+        transforms = []
+        if self.args.enable_musan:
+            logging.info("Enable MUSAN")
+            logging.info("About to get Musan cuts")
+            cuts_musan = load_manifest(self.args.manifest_dir / "musan_cuts.jsonl.gz")
+            transforms.append(
+                CutMix(cuts=cuts_musan, prob=0.5, snr=(10, 20), preserve_id=True)
+            )
+        else:
+            logging.info("Disable MUSAN")
+
+        if self.args.concatenate_cuts:
+            logging.info(
+                f"Using cut concatenation with duration factor "
+                f"{self.args.duration_factor} and gap {self.args.gap}."
+            )
+            # Cut concatenation should be the first transform in the list,
+            # so that if we e.g. mix noise in, it will fill the gaps between
+            # different utterances.
+            transforms = [
+                CutConcatenate(
+                    duration_factor=self.args.duration_factor, gap=self.args.gap
+                )
+            ] + transforms
+
+        input_transforms = []
+        if self.args.enable_spec_aug:
+            logging.info("Enable SpecAugment")
+            logging.info(f"Time warp factor: {self.args.spec_aug_time_warp_factor}")
+            # Set the value of num_frame_masks according to Lhotse's version.
+            # In different Lhotse's versions, the default of num_frame_masks is
+            # different.
+            num_frame_masks = 10
+            num_frame_masks_parameter = inspect.signature(
+                SpecAugment.__init__
+            ).parameters["num_frame_masks"]
+            if num_frame_masks_parameter.default == 1:
+                num_frame_masks = 2
+            logging.info(f"Num frame mask: {num_frame_masks}")
+            input_transforms.append(
+                SpecAugment(
+                    time_warp_factor=self.args.spec_aug_time_warp_factor,
+                    num_frame_masks=num_frame_masks,
+                    features_mask_size=27,
+                    num_feature_masks=2,
+                    frames_mask_size=100,
+                )
+            )
+        else:
+            logging.info("Disable SpecAugment")
+
+        logging.info("About to create train dataset")
+        train = K2SpeechRecognitionDataset(
+            input_strategy=eval(self.args.input_strategy)(),
+            cut_transforms=transforms,
+            input_transforms=input_transforms,
+            return_cuts=self.args.return_cuts,
+        )
+
+        if self.args.on_the_fly_feats:
+            # NOTE: the PerturbSpeed transform should be added only if we
+            # remove it from data prep stage.
+            # Add on-the-fly speed perturbation; since originally it would
+            # have increased epoch size by 3, we will apply prob 2/3 and use
+            # 3x more epochs.
+            # Speed perturbation probably should come first before
+            # concatenation, but in principle the transforms order doesn't have
+            # to be strict (e.g. could be randomized)
+            # transforms = [PerturbSpeed(factors=[0.9, 1.1], p=2/3)] + transforms   # noqa
+            # Drop feats to be on the safe side.
+            train = K2SpeechRecognitionDataset(
+                cut_transforms=transforms,
+                input_strategy=OnTheFlyFeatures(Fbank(FbankConfig(num_mel_bins=80))),
+                input_transforms=input_transforms,
+                return_cuts=self.args.return_cuts,
+            )
+
+        if self.args.bucketing_sampler:
+            logging.info("Using DynamicBucketingSampler.")
+            train_sampler = DynamicBucketingSampler(
+                cuts_train,
+                max_duration=self.args.max_duration,
+                shuffle=self.args.shuffle,
+                num_buckets=self.args.num_buckets,
+                drop_last=self.args.drop_last,
+            )
+        else:
+            logging.info("Using SingleCutSampler.")
+            train_sampler = SingleCutSampler(
+                cuts_train,
+                max_duration=self.args.max_duration,
+                shuffle=self.args.shuffle,
+            )
+        logging.info("About to create train dataloader")
+
+        if sampler_state_dict is not None:
+            logging.info("Loading sampler state dict")
+            train_sampler.load_state_dict(sampler_state_dict)
+
+        # 'seed' is derived from the current random state, which will have
+        # previously been set in the main process.
+        seed = torch.randint(0, 100000, ()).item()
+        worker_init_fn = _SeedWorkers(seed)
+
+        train_dl = DataLoader(
+            train,
+            sampler=train_sampler,
+            batch_size=None,
+            num_workers=self.args.num_workers,
+            persistent_workers=False,
+            worker_init_fn=worker_init_fn,
+        )
+
+        return train_dl
+
+    def valid_dataloaders(self, cuts_valid: CutSet) -> DataLoader:
+        transforms = []
+        if self.args.concatenate_cuts:
+            transforms = [
+                CutConcatenate(
+                    duration_factor=self.args.duration_factor, gap=self.args.gap
+                )
+            ] + transforms
+
+        logging.info("About to create dev dataset")
+        if self.args.on_the_fly_feats:
+            validate = K2SpeechRecognitionDataset(
+                cut_transforms=transforms,
+                input_strategy=OnTheFlyFeatures(Fbank(FbankConfig(num_mel_bins=80))),
+                return_cuts=self.args.return_cuts,
+            )
+        else:
+            validate = K2SpeechRecognitionDataset(
+                cut_transforms=transforms,
+                return_cuts=self.args.return_cuts,
+            )
+        valid_sampler = DynamicBucketingSampler(
+            cuts_valid,
+            max_duration=self.args.max_duration,
+            shuffle=False,
+        )
+        logging.info("About to create dev dataloader")
+        valid_dl = DataLoader(
+            validate,
+            sampler=valid_sampler,
+            batch_size=None,
+            num_workers=2,
+            persistent_workers=False,
+        )
+
+        return valid_dl
+
+    def test_dataloaders(self, cuts: CutSet) -> DataLoader:
+        logging.debug("About to create test dataset")
+        test = K2SpeechRecognitionDataset(
+            input_strategy=OnTheFlyFeatures(Fbank(FbankConfig(num_mel_bins=80)))
+            if self.args.on_the_fly_feats
+            else eval(self.args.input_strategy)(),
+            return_cuts=self.args.return_cuts,
+        )
+        sampler = DynamicBucketingSampler(
+            cuts,
+            max_duration=self.args.max_duration,
+            shuffle=False,
+        )
+        logging.debug("About to create test dataloader")
+        test_dl = DataLoader(
+            test,
+            batch_size=None,
+            sampler=sampler,
+            num_workers=self.args.num_workers,
+        )
+        return test_dl
+
+    @lru_cache()
+    def train_clean_100_cuts(self) -> CutSet:
+        logging.info("About to get train-clean-100 cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "mucs_cuts_train.jsonl.gz"
+        )
+    @lru_cache()
+    def dev_mucs_cuts(self) -> CutSet:
+        logging.info("About to get valid-mucs")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "mucs_cuts_dev.jsonl.gz"
+        )
+    
+    @lru_cache()
+    def test_mucs_cuts(self) -> CutSet:
+        logging.info("About to get test-clean cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "mucs_cuts_test.jsonl.gz"
+        )
+    @lru_cache()
+    def train_clean_mucs_cuts(self) -> CutSet:
+        logging.info("About to get train-mucs")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "mucs_cuts_train.jsonl.gz"
+        )
+
+
+    @lru_cache()
+    def train_clean_360_cuts(self) -> CutSet:
+        logging.info("About to get train-clean-360 cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_train-clean-360.jsonl.gz"
+        )
+
+    @lru_cache()
+    def train_other_500_cuts(self) -> CutSet:
+        logging.info("About to get train-other-500 cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_train-other-500.jsonl.gz"
+        )
+
+    @lru_cache()
+    def train_all_shuf_cuts(self) -> CutSet:
+        logging.info(
+            "About to get the shuffled train-clean-100, \
+            train-clean-360 and train-other-500 cuts"
+        )
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_train-all-shuf.jsonl.gz"
+        )
+
+    @lru_cache()
+    def dev_clean_cuts(self) -> CutSet:
+        logging.info("About to get dev-clean cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_dev-clean.jsonl.gz"
+        )
+
+    @lru_cache()
+    def dev_other_cuts(self) -> CutSet:
+        logging.info("About to get dev-other cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_dev-other.jsonl.gz"
+        )
+
+    @lru_cache()
+    def test_clean_cuts(self) -> CutSet:
+        logging.info("About to get test-clean cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_test-clean.jsonl.gz"
+        )
+
+    @lru_cache()
+    def test_other_cuts(self) -> CutSet:
+        logging.info("About to get test-other cuts")
+        return load_manifest_lazy(
+            self.args.manifest_dir / "librispeech_cuts_test-other.jsonl.gz"
+        )

egs/mucs/ASR/conformer_ctc/conformer.py

@@ -0,0 +1,910 @@
+#!/usr/bin/env python3
+# Copyright (c)  2021  University of Chinese Academy of Sciences (author: Han Zhu)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import math
+import warnings
+from typing import Optional, Tuple, Union
+
+import torch
+from torch import Tensor, nn
+from transformer import Supervisions, Transformer, encoder_padding_mask
+
+
+class Conformer(Transformer):
+    """
+    Args:
+        num_features (int): Number of input features
+        num_classes (int): Number of output classes
+        subsampling_factor (int): subsampling factor of encoder (the convolution layers before transformers)
+        d_model (int): attention dimension
+        nhead (int): number of head
+        dim_feedforward (int): feedforward dimention
+        num_encoder_layers (int): number of encoder layers
+        num_decoder_layers (int): number of decoder layers
+        dropout (float): dropout rate
+        cnn_module_kernel (int): Kernel size of convolution module
+        normalize_before (bool): whether to use layer_norm before the first block.
+        vgg_frontend (bool): whether to use vgg frontend.
+    """
+
+    def __init__(
+        self,
+        num_features: int,
+        num_classes: int,
+        subsampling_factor: int = 4,
+        d_model: int = 256,
+        nhead: int = 4,
+        dim_feedforward: int = 2048,
+        num_encoder_layers: int = 12,
+        num_decoder_layers: int = 6,
+        dropout: float = 0.1,
+        cnn_module_kernel: int = 31,
+        normalize_before: bool = True,
+        vgg_frontend: bool = False,
+        use_feat_batchnorm: Union[float, bool] = 0.1,
+    ) -> None:
+        super(Conformer, self).__init__(
+            num_features=num_features,
+            num_classes=num_classes,
+            subsampling_factor=subsampling_factor,
+            d_model=d_model,
+            nhead=nhead,
+            dim_feedforward=dim_feedforward,
+            num_encoder_layers=num_encoder_layers,
+            num_decoder_layers=num_decoder_layers,
+            dropout=dropout,
+            normalize_before=normalize_before,
+            vgg_frontend=vgg_frontend,
+            use_feat_batchnorm=use_feat_batchnorm,
+        )
+
+        self.encoder_pos = RelPositionalEncoding(d_model, dropout)
+
+        use_conv_batchnorm = True
+        if isinstance(use_feat_batchnorm, float):
+            use_conv_batchnorm = False
+        encoder_layer = ConformerEncoderLayer(
+            d_model,
+            nhead,
+            dim_feedforward,
+            dropout,
+            cnn_module_kernel,
+            normalize_before,
+            use_conv_batchnorm,
+        )
+        self.encoder = ConformerEncoder(encoder_layer, num_encoder_layers)
+        self.normalize_before = normalize_before
+        if self.normalize_before:
+            self.after_norm = nn.LayerNorm(d_model)
+        else:
+            # Note: TorchScript detects that self.after_norm could be used inside forward()
+            #       and throws an error without this change.
+            self.after_norm = identity
+
+    def run_encoder(
+        self, x: Tensor, supervisions: Optional[Supervisions] = None
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        """
+        Args:
+          x:
+            The model input. Its shape is (N, T, C).
+          supervisions:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            CAUTION: It contains length information, i.e., start and number of
+            frames, before subsampling
+            It is read directly from the batch, without any sorting. It is used
+            to compute encoder padding mask, which is used as memory key padding
+            mask for the decoder.
+
+        Returns:
+            Tensor: Predictor tensor of dimension (input_length, batch_size, d_model).
+            Tensor: Mask tensor of dimension (batch_size, input_length)
+        """
+        x = self.encoder_embed(x)
+        x, pos_emb = self.encoder_pos(x)
+        x = x.permute(1, 0, 2)  # (B, T, F) -> (T, B, F)
+        mask = encoder_padding_mask(x.size(0), supervisions)
+        if mask is not None:
+            mask = mask.to(x.device)
+        x = self.encoder(x, pos_emb, src_key_padding_mask=mask)  # (T, B, F)
+
+        if self.normalize_before:
+            x = self.after_norm(x)
+
+        return x, mask
+
+
+class ConformerEncoderLayer(nn.Module):
+    """
+    ConformerEncoderLayer is made up of self-attn, feedforward and convolution networks.
+    See: "Conformer: Convolution-augmented Transformer for Speech Recognition"
+
+    Args:
+        d_model: the number of expected features in the input (required).
+        nhead: the number of heads in the multiheadattention models (required).
+        dim_feedforward: the dimension of the feedforward network model (default=2048).
+        dropout: the dropout value (default=0.1).
+        cnn_module_kernel (int): Kernel size of convolution module.
+        normalize_before: whether to use layer_norm before the first block.
+
+    Examples::
+        >>> encoder_layer = ConformerEncoderLayer(d_model=512, nhead=8)
+        >>> src = torch.rand(10, 32, 512)
+        >>> pos_emb = torch.rand(32, 19, 512)
+        >>> out = encoder_layer(src, pos_emb)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        cnn_module_kernel: int = 31,
+        normalize_before: bool = True,
+        use_conv_batchnorm: bool = False,
+    ) -> None:
+        super(ConformerEncoderLayer, self).__init__()
+        self.self_attn = RelPositionMultiheadAttention(d_model, nhead, dropout=0.0)
+
+        self.feed_forward = nn.Sequential(
+            nn.Linear(d_model, dim_feedforward),
+            Swish(),
+            nn.Dropout(dropout),
+            nn.Linear(dim_feedforward, d_model),
+        )
+
+        self.feed_forward_macaron = nn.Sequential(
+            nn.Linear(d_model, dim_feedforward),
+            Swish(),
+            nn.Dropout(dropout),
+            nn.Linear(dim_feedforward, d_model),
+        )
+
+        self.conv_module = ConvolutionModule(
+            d_model, cnn_module_kernel, use_batchnorm=use_conv_batchnorm
+        )
+
+        self.norm_ff_macaron = nn.LayerNorm(d_model)  # for the macaron style FNN module
+        self.norm_ff = nn.LayerNorm(d_model)  # for the FNN module
+        self.norm_mha = nn.LayerNorm(d_model)  # for the MHA module
+
+        self.ff_scale = 0.5
+
+        self.norm_conv = nn.LayerNorm(d_model)  # for the CNN module
+        self.norm_final = nn.LayerNorm(d_model)  # for the final output of the block
+
+        self.dropout = nn.Dropout(dropout)
+
+        self.normalize_before = normalize_before
+
+    def forward(
+        self,
+        src: Tensor,
+        pos_emb: Tensor,
+        src_mask: Optional[Tensor] = None,
+        src_key_padding_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """
+        Pass the input through the encoder layer.
+
+        Args:
+            src: the sequence to the encoder layer (required).
+            pos_emb: Positional embedding tensor (required).
+            src_mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional).
+
+        Shape:
+            src: (S, N, E).
+            pos_emb: (N, 2*S-1, E)
+            src_mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, N is the batch size, E is the feature number
+        """
+
+        # macaron style feed forward module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_ff_macaron(src)
+        src = residual + self.ff_scale * self.dropout(self.feed_forward_macaron(src))
+        if not self.normalize_before:
+            src = self.norm_ff_macaron(src)
+
+        # multi-headed self-attention module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_mha(src)
+        src_att = self.self_attn(
+            src,
+            src,
+            src,
+            pos_emb=pos_emb,
+            attn_mask=src_mask,
+            key_padding_mask=src_key_padding_mask,
+        )[0]
+        src = residual + self.dropout(src_att)
+        if not self.normalize_before:
+            src = self.norm_mha(src)
+
+        # convolution module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_conv(src)
+        src = residual + self.dropout(
+            self.conv_module(src, src_key_padding_mask=src_key_padding_mask)
+        )
+        if not self.normalize_before:
+            src = self.norm_conv(src)
+
+        # feed forward module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_ff(src)
+        src = residual + self.ff_scale * self.dropout(self.feed_forward(src))
+        if not self.normalize_before:
+            src = self.norm_ff(src)
+
+        if self.normalize_before:
+            src = self.norm_final(src)
+
+        return src
+
+
+class ConformerEncoder(nn.TransformerEncoder):
+    r"""ConformerEncoder is a stack of N encoder layers
+
+    Args:
+        encoder_layer: an instance of the ConformerEncoderLayer() class (required).
+        num_layers: the number of sub-encoder-layers in the encoder (required).
+        norm: the layer normalization component (optional).
+
+    Examples::
+        >>> encoder_layer = ConformerEncoderLayer(d_model=512, nhead=8)
+        >>> conformer_encoder = ConformerEncoder(encoder_layer, num_layers=6)
+        >>> src = torch.rand(10, 32, 512)
+        >>> pos_emb = torch.rand(32, 19, 512)
+        >>> out = conformer_encoder(src, pos_emb)
+    """
+
+    def __init__(
+        self, encoder_layer: nn.Module, num_layers: int, norm: nn.Module = None
+    ) -> None:
+        super(ConformerEncoder, self).__init__(
+            encoder_layer=encoder_layer, num_layers=num_layers, norm=norm
+        )
+
+    def forward(
+        self,
+        src: Tensor,
+        pos_emb: Tensor,
+        mask: Optional[Tensor] = None,
+        src_key_padding_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        r"""Pass the input through the encoder layers in turn.
+
+        Args:
+            src: the sequence to the encoder (required).
+            pos_emb: Positional embedding tensor (required).
+            mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional).
+
+        Shape:
+            src: (S, N, E).
+            pos_emb: (N, 2*S-1, E)
+            mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length, N is the batch size, E is the feature number
+
+        """
+        output = src
+
+        for mod in self.layers:
+            output = mod(
+                output,
+                pos_emb,
+                src_mask=mask,
+                src_key_padding_mask=src_key_padding_mask,
+            )
+
+        if self.norm is not None:
+            output = self.norm(output)
+
+        return output
+
+
+class RelPositionalEncoding(torch.nn.Module):
+    """Relative positional encoding module.
+
+    See : Appendix B in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+    Modified from https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/embedding.py
+
+    Args:
+        d_model: Embedding dimension.
+        dropout_rate: Dropout rate.
+        max_len: Maximum input length.
+
+    """
+
+    def __init__(self, d_model: int, dropout_rate: float, max_len: int = 5000) -> None:
+        """Construct an PositionalEncoding object."""
+        super(RelPositionalEncoding, self).__init__()
+        self.d_model = d_model
+        self.xscale = math.sqrt(self.d_model)
+        self.dropout = torch.nn.Dropout(p=dropout_rate)
+        self.pe = None
+        self.extend_pe(torch.tensor(0.0).expand(1, max_len))
+
+    def extend_pe(self, x: Tensor) -> None:
+        """Reset the positional encodings."""
+        if self.pe is not None:
+            # self.pe contains both positive and negative parts
+            # the length of self.pe is 2 * input_len - 1
+            if self.pe.size(1) >= x.size(1) * 2 - 1:
+                # Note: TorchScript doesn't implement operator== for torch.Device
+                if self.pe.dtype != x.dtype or str(self.pe.device) != str(x.device):
+                    self.pe = self.pe.to(dtype=x.dtype, device=x.device)
+                return
+        # Suppose `i` means to the position of query vector and `j` means the
+        # position of key vector. We use position relative positions when keys
+        # are to the left (i>j) and negative relative positions otherwise (i<j).
+        pe_positive = torch.zeros(x.size(1), self.d_model)
+        pe_negative = torch.zeros(x.size(1), self.d_model)
+        position = torch.arange(0, x.size(1), dtype=torch.float32).unsqueeze(1)
+        div_term = torch.exp(
+            torch.arange(0, self.d_model, 2, dtype=torch.float32)
+            * -(math.log(10000.0) / self.d_model)
+        )
+        pe_positive[:, 0::2] = torch.sin(position * div_term)
+        pe_positive[:, 1::2] = torch.cos(position * div_term)
+        pe_negative[:, 0::2] = torch.sin(-1 * position * div_term)
+        pe_negative[:, 1::2] = torch.cos(-1 * position * div_term)
+
+        # Reserve the order of positive indices and concat both positive and
+        # negative indices. This is used to support the shifting trick
+        # as in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+        pe_positive = torch.flip(pe_positive, [0]).unsqueeze(0)
+        pe_negative = pe_negative[1:].unsqueeze(0)
+        pe = torch.cat([pe_positive, pe_negative], dim=1)
+        self.pe = pe.to(device=x.device, dtype=x.dtype)
+
+    def forward(self, x: torch.Tensor) -> Tuple[Tensor, Tensor]:
+        """Add positional encoding.
+
+        Args:
+            x (torch.Tensor): Input tensor (batch, time, `*`).
+
+        Returns:
+            torch.Tensor: Encoded tensor (batch, time, `*`).
+            torch.Tensor: Encoded tensor (batch, 2*time-1, `*`).
+
+        """
+        self.extend_pe(x)
+        x = x * self.xscale
+        pos_emb = self.pe[
+            :,
+            self.pe.size(1) // 2
+            - x.size(1)
+            + 1 : self.pe.size(1) // 2  # noqa E203
+            + x.size(1),
+        ]
+        return self.dropout(x), self.dropout(pos_emb)
+
+
+class RelPositionMultiheadAttention(nn.Module):
+    r"""Multi-Head Attention layer with relative position encoding
+
+    See reference: "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+
+    Args:
+        embed_dim: total dimension of the model.
+        num_heads: parallel attention heads.
+        dropout: a Dropout layer on attn_output_weights. Default: 0.0.
+
+    Examples::
+
+        >>> rel_pos_multihead_attn = RelPositionMultiheadAttention(embed_dim, num_heads)
+        >>> attn_output, attn_output_weights = multihead_attn(query, key, value, pos_emb)
+    """
+
+    def __init__(
+        self,
+        embed_dim: int,
+        num_heads: int,
+        dropout: float = 0.0,
+    ) -> None:
+        super(RelPositionMultiheadAttention, self).__init__()
+        self.embed_dim = embed_dim
+        self.num_heads = num_heads
+        self.dropout = dropout
+        self.head_dim = embed_dim // num_heads
+        assert (
+            self.head_dim * num_heads == self.embed_dim
+        ), "embed_dim must be divisible by num_heads"
+
+        self.in_proj = nn.Linear(embed_dim, 3 * embed_dim, bias=True)
+        self.out_proj = nn.Linear(embed_dim, embed_dim, bias=True)
+
+        # linear transformation for positional encoding.
+        self.linear_pos = nn.Linear(embed_dim, embed_dim, bias=False)
+        # these two learnable bias are used in matrix c and matrix d
+        # as described in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context" Section 3.3
+        self.pos_bias_u = nn.Parameter(torch.Tensor(num_heads, self.head_dim))
+        self.pos_bias_v = nn.Parameter(torch.Tensor(num_heads, self.head_dim))
+
+        self._reset_parameters()
+
+    def _reset_parameters(self) -> None:
+        nn.init.xavier_uniform_(self.in_proj.weight)
+        nn.init.constant_(self.in_proj.bias, 0.0)
+        nn.init.constant_(self.out_proj.bias, 0.0)
+
+        nn.init.xavier_uniform_(self.pos_bias_u)
+        nn.init.xavier_uniform_(self.pos_bias_v)
+
+    def forward(
+        self,
+        query: Tensor,
+        key: Tensor,
+        value: Tensor,
+        pos_emb: Tensor,
+        key_padding_mask: Optional[Tensor] = None,
+        need_weights: bool = True,
+        attn_mask: Optional[Tensor] = None,
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        r"""
+        Args:
+            query, key, value: map a query and a set of key-value pairs to an output.
+            pos_emb: Positional embedding tensor
+            key_padding_mask: if provided, specified padding elements in the key will
+                be ignored by the attention. When given a binary mask and a value is True,
+                the corresponding value on the attention layer will be ignored. When given
+                a byte mask and a value is non-zero, the corresponding value on the attention
+                layer will be ignored
+            need_weights: output attn_output_weights.
+            attn_mask: 2D or 3D mask that prevents attention to certain positions. A 2D mask will be broadcasted for all
+                the batches while a 3D mask allows to specify a different mask for the entries of each batch.
+
+        Shape:
+            - Inputs:
+            - query: :math:`(L, N, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key: :math:`(S, N, E)`, where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - value: :math:`(S, N, E)` where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - pos_emb: :math:`(N, 2*L-1, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key_padding_mask: :math:`(N, S)` where N is the batch size, S is the source sequence length.
+            If a ByteTensor is provided, the non-zero positions will be ignored while the position
+            with the zero positions will be unchanged. If a BoolTensor is provided, the positions with the
+            value of ``True`` will be ignored while the position with the value of ``False`` will be unchanged.
+            - attn_mask: 2D mask :math:`(L, S)` where L is the target sequence length, S is the source sequence length.
+            3D mask :math:`(N*num_heads, L, S)` where N is the batch size, L is the target sequence length,
+            S is the source sequence length. attn_mask ensure that position i is allowed to attend the unmasked
+            positions. If a ByteTensor is provided, the non-zero positions are not allowed to attend
+            while the zero positions will be unchanged. If a BoolTensor is provided, positions with ``True``
+            is not allowed to attend while ``False`` values will be unchanged. If a FloatTensor
+            is provided, it will be added to the attention weight.
+
+            - Outputs:
+            - attn_output: :math:`(L, N, E)` where L is the target sequence length, N is the batch size,
+            E is the embedding dimension.
+            - attn_output_weights: :math:`(N, L, S)` where N is the batch size,
+            L is the target sequence length, S is the source sequence length.
+        """
+        return self.multi_head_attention_forward(
+            query,
+            key,
+            value,
+            pos_emb,
+            self.embed_dim,
+            self.num_heads,
+            self.in_proj.weight,
+            self.in_proj.bias,
+            self.dropout,
+            self.out_proj.weight,
+            self.out_proj.bias,
+            training=self.training,
+            key_padding_mask=key_padding_mask,
+            need_weights=need_weights,
+            attn_mask=attn_mask,
+        )
+
+    def rel_shift(self, x: Tensor) -> Tensor:
+        """Compute relative positional encoding.
+
+        Args:
+            x: Input tensor (batch, head, time1, 2*time1-1).
+                time1 means the length of query vector.
+
+        Returns:
+            Tensor: tensor of shape (batch, head, time1, time2)
+          (note: time2 has the same value as time1, but it is for
+          the key, while time1 is for the query).
+        """
+        (batch_size, num_heads, time1, n) = x.shape
+        assert n == 2 * time1 - 1
+        # Note: TorchScript requires explicit arg for stride()
+        batch_stride = x.stride(0)
+        head_stride = x.stride(1)
+        time1_stride = x.stride(2)
+        n_stride = x.stride(3)
+        return x.as_strided(
+            (batch_size, num_heads, time1, time1),
+            (batch_stride, head_stride, time1_stride - n_stride, n_stride),
+            storage_offset=n_stride * (time1 - 1),
+        )
+
+    def multi_head_attention_forward(
+        self,
+        query: Tensor,
+        key: Tensor,
+        value: Tensor,
+        pos_emb: Tensor,
+        embed_dim_to_check: int,
+        num_heads: int,
+        in_proj_weight: Tensor,
+        in_proj_bias: Tensor,
+        dropout_p: float,
+        out_proj_weight: Tensor,
+        out_proj_bias: Tensor,
+        training: bool = True,
+        key_padding_mask: Optional[Tensor] = None,
+        need_weights: bool = True,
+        attn_mask: Optional[Tensor] = None,
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        r"""
+        Args:
+            query, key, value: map a query and a set of key-value pairs to an output.
+            pos_emb: Positional embedding tensor
+            embed_dim_to_check: total dimension of the model.
+            num_heads: parallel attention heads.
+            in_proj_weight, in_proj_bias: input projection weight and bias.
+            dropout_p: probability of an element to be zeroed.
+            out_proj_weight, out_proj_bias: the output projection weight and bias.
+            training: apply dropout if is ``True``.
+            key_padding_mask: if provided, specified padding elements in the key will
+                be ignored by the attention. This is an binary mask. When the value is True,
+                the corresponding value on the attention layer will be filled with -inf.
+            need_weights: output attn_output_weights.
+            attn_mask: 2D or 3D mask that prevents attention to certain positions. A 2D mask will be broadcasted for all
+                the batches while a 3D mask allows to specify a different mask for the entries of each batch.
+
+        Shape:
+            Inputs:
+            - query: :math:`(L, N, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key: :math:`(S, N, E)`, where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - value: :math:`(S, N, E)` where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - pos_emb: :math:`(N, 2*L-1, E)` or :math:`(1, 2*L-1, E)` where L is the target sequence
+            length, N is the batch size, E is the embedding dimension.
+            - key_padding_mask: :math:`(N, S)` where N is the batch size, S is the source sequence length.
+            If a ByteTensor is provided, the non-zero positions will be ignored while the zero positions
+            will be unchanged. If a BoolTensor is provided, the positions with the
+            value of ``True`` will be ignored while the position with the value of ``False`` will be unchanged.
+            - attn_mask: 2D mask :math:`(L, S)` where L is the target sequence length, S is the source sequence length.
+            3D mask :math:`(N*num_heads, L, S)` where N is the batch size, L is the target sequence length,
+            S is the source sequence length. attn_mask ensures that position i is allowed to attend the unmasked
+            positions. If a ByteTensor is provided, the non-zero positions are not allowed to attend
+            while the zero positions will be unchanged. If a BoolTensor is provided, positions with ``True``
+            are not allowed to attend while ``False`` values will be unchanged. If a FloatTensor
+            is provided, it will be added to the attention weight.
+
+            Outputs:
+            - attn_output: :math:`(L, N, E)` where L is the target sequence length, N is the batch size,
+            E is the embedding dimension.
+            - attn_output_weights: :math:`(N, L, S)` where N is the batch size,
+            L is the target sequence length, S is the source sequence length.
+        """
+
+        tgt_len, bsz, embed_dim = query.size()
+        assert embed_dim == embed_dim_to_check
+        assert key.size(0) == value.size(0) and key.size(1) == value.size(1)
+
+        head_dim = embed_dim // num_heads
+        assert (
+            head_dim * num_heads == embed_dim
+        ), "embed_dim must be divisible by num_heads"
+        scaling = float(head_dim) ** -0.5
+
+        if torch.equal(query, key) and torch.equal(key, value):
+            # self-attention
+            q, k, v = nn.functional.linear(query, in_proj_weight, in_proj_bias).chunk(
+                3, dim=-1
+            )
+
+        elif torch.equal(key, value):
+            # encoder-decoder attention
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = 0
+            _end = embed_dim
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            q = nn.functional.linear(query, _w, _b)
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim
+            _end = None
+            _w = in_proj_weight[_start:, :]
+            if _b is not None:
+                _b = _b[_start:]
+            k, v = nn.functional.linear(key, _w, _b).chunk(2, dim=-1)
+
+        else:
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = 0
+            _end = embed_dim
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            q = nn.functional.linear(query, _w, _b)
+
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim
+            _end = embed_dim * 2
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            k = nn.functional.linear(key, _w, _b)
+
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim * 2
+            _end = None
+            _w = in_proj_weight[_start:, :]
+            if _b is not None:
+                _b = _b[_start:]
+            v = nn.functional.linear(value, _w, _b)
+
+        if attn_mask is not None:
+            assert (
+                attn_mask.dtype == torch.float32
+                or attn_mask.dtype == torch.float64
+                or attn_mask.dtype == torch.float16
+                or attn_mask.dtype == torch.uint8
+                or attn_mask.dtype == torch.bool
+            ), "Only float, byte, and bool types are supported for attn_mask, not {}".format(
+                attn_mask.dtype
+            )
+            if attn_mask.dtype == torch.uint8:
+                warnings.warn(
+                    "Byte tensor for attn_mask is deprecated. Use bool tensor instead."
+                )
+                attn_mask = attn_mask.to(torch.bool)
+
+            if attn_mask.dim() == 2:
+                attn_mask = attn_mask.unsqueeze(0)
+                if list(attn_mask.size()) != [1, query.size(0), key.size(0)]:
+                    raise RuntimeError("The size of the 2D attn_mask is not correct.")
+            elif attn_mask.dim() == 3:
+                if list(attn_mask.size()) != [
+                    bsz * num_heads,
+                    query.size(0),
+                    key.size(0),
+                ]:
+                    raise RuntimeError("The size of the 3D attn_mask is not correct.")
+            else:
+                raise RuntimeError(
+                    "attn_mask's dimension {} is not supported".format(attn_mask.dim())
+                )
+            # attn_mask's dim is 3 now.
+
+        # convert ByteTensor key_padding_mask to bool
+        if key_padding_mask is not None and key_padding_mask.dtype == torch.uint8:
+            warnings.warn(
+                "Byte tensor for key_padding_mask is deprecated. Use bool tensor instead."
+            )
+            key_padding_mask = key_padding_mask.to(torch.bool)
+
+        q = q.contiguous().view(tgt_len, bsz, num_heads, head_dim)
+        k = k.contiguous().view(-1, bsz, num_heads, head_dim)
+        v = v.contiguous().view(-1, bsz * num_heads, head_dim).transpose(0, 1)
+
+        src_len = k.size(0)
+
+        if key_padding_mask is not None:
+            assert key_padding_mask.size(0) == bsz, "{} == {}".format(
+                key_padding_mask.size(0), bsz
+            )
+            assert key_padding_mask.size(1) == src_len, "{} == {}".format(
+                key_padding_mask.size(1), src_len
+            )
+
+        q = q.transpose(0, 1)  # (batch, time1, head, d_k)
+
+        pos_emb_bsz = pos_emb.size(0)
+        assert pos_emb_bsz in (1, bsz)  # actually it is 1
+        p = self.linear_pos(pos_emb).view(pos_emb_bsz, -1, num_heads, head_dim)
+        p = p.transpose(1, 2)  # (batch, head, 2*time1-1, d_k)
+
+        q_with_bias_u = (q + self.pos_bias_u).transpose(
+            1, 2
+        )  # (batch, head, time1, d_k)
+
+        q_with_bias_v = (q + self.pos_bias_v).transpose(
+            1, 2
+        )  # (batch, head, time1, d_k)
+
+        # compute attention score
+        # first compute matrix a and matrix c
+        # as described in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context" Section 3.3
+        k = k.permute(1, 2, 3, 0)  # (batch, head, d_k, time2)
+        matrix_ac = torch.matmul(q_with_bias_u, k)  # (batch, head, time1, time2)
+
+        # compute matrix b and matrix d
+        matrix_bd = torch.matmul(
+            q_with_bias_v, p.transpose(-2, -1)
+        )  # (batch, head, time1, 2*time1-1)
+        matrix_bd = self.rel_shift(matrix_bd)
+
+        attn_output_weights = (
+            matrix_ac + matrix_bd
+        ) * scaling  # (batch, head, time1, time2)
+
+        attn_output_weights = attn_output_weights.view(bsz * num_heads, tgt_len, -1)
+
+        assert list(attn_output_weights.size()) == [
+            bsz * num_heads,
+            tgt_len,
+            src_len,
+        ]
+
+        if attn_mask is not None:
+            if attn_mask.dtype == torch.bool:
+                attn_output_weights.masked_fill_(attn_mask, float("-inf"))
+            else:
+                attn_output_weights += attn_mask
+
+        if key_padding_mask is not None:
+            attn_output_weights = attn_output_weights.view(
+                bsz, num_heads, tgt_len, src_len
+            )
+            attn_output_weights = attn_output_weights.masked_fill(
+                key_padding_mask.unsqueeze(1).unsqueeze(2),
+                float("-inf"),
+            )
+            attn_output_weights = attn_output_weights.view(
+                bsz * num_heads, tgt_len, src_len
+            )
+
+        attn_output_weights = nn.functional.softmax(attn_output_weights, dim=-1)
+        attn_output_weights = nn.functional.dropout(
+            attn_output_weights, p=dropout_p, training=training
+        )
+
+        attn_output = torch.bmm(attn_output_weights, v)
+        assert list(attn_output.size()) == [bsz * num_heads, tgt_len, head_dim]
+        attn_output = (
+            attn_output.transpose(0, 1).contiguous().view(tgt_len, bsz, embed_dim)
+        )
+        attn_output = nn.functional.linear(attn_output, out_proj_weight, out_proj_bias)
+
+        if need_weights:
+            # average attention weights over heads
+            attn_output_weights = attn_output_weights.view(
+                bsz, num_heads, tgt_len, src_len
+            )
+            return attn_output, attn_output_weights.sum(dim=1) / num_heads
+        else:
+            return attn_output, None
+
+
+class ConvolutionModule(nn.Module):
+    """ConvolutionModule in Conformer model.
+    Modified from https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/conformer/convolution.py
+
+    Args:
+        channels (int): The number of channels of conv layers.
+        kernel_size (int): Kernerl size of conv layers.
+        bias (bool): Whether to use bias in conv layers (default=True).
+
+    """
+
+    def __init__(
+        self,
+        channels: int,
+        kernel_size: int,
+        bias: bool = True,
+        use_batchnorm: bool = False,
+    ) -> None:
+        """Construct an ConvolutionModule object."""
+        super(ConvolutionModule, self).__init__()
+        # kernerl_size should be a odd number for 'SAME' padding
+        assert (kernel_size - 1) % 2 == 0
+        self.use_batchnorm = use_batchnorm
+
+        self.pointwise_conv1 = nn.Conv1d(
+            channels,
+            2 * channels,
+            kernel_size=1,
+            stride=1,
+            padding=0,
+            bias=bias,
+        )
+        self.depthwise_conv = nn.Conv1d(
+            channels,
+            channels,
+            kernel_size,
+            stride=1,
+            padding=(kernel_size - 1) // 2,
+            groups=channels,
+            bias=bias,
+        )
+        if self.use_batchnorm:
+            self.norm = nn.BatchNorm1d(channels)
+        self.pointwise_conv2 = nn.Conv1d(
+            channels,
+            channels,
+            kernel_size=1,
+            stride=1,
+            padding=0,
+            bias=bias,
+        )
+        self.activation = Swish()
+
+    def forward(
+        self,
+        x: Tensor,
+        src_key_padding_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """Compute convolution module.
+
+        Args:
+            x: Input tensor (#time, batch, channels).
+            src_key_padding_mask: the mask for the src keys per batch (optional).
+
+        Returns:
+            Tensor: Output tensor (#time, batch, channels).
+
+        """
+        # exchange the temporal dimension and the feature dimension
+        x = x.permute(1, 2, 0)  # (#batch, channels, time).
+
+        # GLU mechanism
+        x = self.pointwise_conv1(x)  # (batch, 2*channels, time)
+        x = nn.functional.glu(x, dim=1)  # (batch, channels, time)
+
+        # 1D Depthwise Conv
+        if src_key_padding_mask is not None:
+            x.masked_fill_(src_key_padding_mask.unsqueeze(1).expand_as(x), 0.0)
+        x = self.depthwise_conv(x)
+        if self.use_batchnorm:
+            x = self.norm(x)
+        x = self.activation(x)
+
+        x = self.pointwise_conv2(x)  # (batch, channel, time)
+
+        return x.permute(2, 0, 1)
+
+
+class Swish(torch.nn.Module):
+    """Construct an Swish object."""
+
+    def forward(self, x: Tensor) -> Tensor:
+        """Return Swich activation function."""
+        return x * torch.sigmoid(x)
+
+
+def identity(x):
+    return x

egs/mucs/ASR/conformer_ctc/decode.py

@@ -0,0 +1,813 @@
+#!/usr/bin/env python3
+# Copyright 2021 Xiaomi Corporation (Author: Liyong Guo, Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import argparse
+import logging
+from collections import defaultdict
+from pathlib import Path
+from typing import Dict, List, Optional, Tuple
+
+import k2
+import sentencepiece as spm
+import torch
+import torch.nn as nn
+from asr_datamodule import LibriSpeechAsrDataModule
+from conformer import Conformer
+
+from icefall.bpe_graph_compiler import BpeCtcTrainingGraphCompiler
+from icefall.checkpoint import load_checkpoint
+from icefall.decode import (
+    get_lattice,
+    nbest_decoding,
+    nbest_oracle,
+    one_best_decoding,
+    rescore_with_attention_decoder,
+    rescore_with_n_best_list,
+    rescore_with_rnn_lm,
+    rescore_with_whole_lattice,
+)
+from icefall.env import get_env_info
+from icefall.lexicon import Lexicon
+from icefall.rnn_lm.model import RnnLmModel
+from icefall.utils import (
+    AttributeDict,
+    get_texts,
+    load_averaged_model,
+    setup_logger,
+    store_transcripts,
+    str2bool,
+    write_error_stats,
+)
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--epoch",
+        type=int,
+        default=77,
+        help="It specifies the checkpoint to use for decoding."
+        "Note: Epoch counts from 0.",
+    )
+    parser.add_argument(
+        "--avg",
+        type=int,
+        default=55,
+        help="Number of checkpoints to average. Automatically select "
+        "consecutive checkpoints before the checkpoint specified by "
+        "'--epoch'. ",
+    )
+
+    parser.add_argument(
+        "--method",
+        type=str,
+        default="attention-decoder",
+        help="""Decoding method.
+        Supported values are:
+            - (0) ctc-decoding. Use CTC decoding. It uses a sentence piece
+              model, i.e., lang_dir/bpe.model, to convert word pieces to words.
+              It needs neither a lexicon nor an n-gram LM.
+            - (1) 1best. Extract the best path from the decoding lattice as the
+              decoding result.
+            - (2) nbest. Extract n paths from the decoding lattice; the path
+              with the highest score is the decoding result.
+            - (3) nbest-rescoring. Extract n paths from the decoding lattice,
+              rescore them with an n-gram LM (e.g., a 4-gram LM), the path with
+              the highest score is the decoding result.
+            - (4) whole-lattice-rescoring. Rescore the decoding lattice with an
+              n-gram LM (e.g., a 4-gram LM), the best path of rescored lattice
+              is the decoding result.
+            - (5) attention-decoder. Extract n paths from the LM rescored
+              lattice, the path with the highest score is the decoding result.
+            - (6) rnn-lm. Rescoring with attention-decoder and RNN LM. We assume
+              you have trained an RNN LM using ./rnn_lm/train.py
+            - (7) nbest-oracle. Its WER is the lower bound of any n-best
+              rescoring method can achieve. Useful for debugging n-best
+              rescoring method.
+        """,
+    )
+
+    parser.add_argument(
+        "--num-paths",
+        type=int,
+        default=100,
+        help="""Number of paths for n-best based decoding method.
+        Used only when "method" is one of the following values:
+        nbest, nbest-rescoring, attention-decoder, rnn-lm, and nbest-oracle
+        """,
+    )
+
+    parser.add_argument(
+        "--nbest-scale",
+        type=float,
+        default=0.5,
+        help="""The scale to be applied to `lattice.scores`.
+        It's needed if you use any kinds of n-best based rescoring.
+        Used only when "method" is one of the following values:
+        nbest, nbest-rescoring, attention-decoder, rnn-lm, and nbest-oracle
+        A smaller value results in more unique paths.
+        """,
+    )
+
+    parser.add_argument(
+        "--exp-dir",
+        type=str,
+        default="conformer_ctc/exp",
+        help="The experiment dir",
+    )
+
+    parser.add_argument(
+        "--lang-dir",
+        type=str,
+        default="data/lang_bpe_500",
+        help="The lang dir",
+    )
+
+    parser.add_argument(
+        "--lm-dir",
+        type=str,
+        default="data/lm",
+        help="""The n-gram LM dir.
+        It should contain either G_4_gram.pt or G_4_gram.fst.txt
+        """,
+    )
+
+    parser.add_argument(
+        "--rnn-lm-exp-dir",
+        type=str,
+        default="rnn_lm/exp",
+        help="""Used only when --method is rnn-lm.
+        It specifies the path to RNN LM exp dir.
+        """,
+    )
+
+    parser.add_argument(
+        "--rnn-lm-epoch",
+        type=int,
+        default=7,
+        help="""Used only when --method is rnn-lm.
+        It specifies the checkpoint to use.
+        """,
+    )
+
+    parser.add_argument(
+        "--rnn-lm-avg",
+        type=int,
+        default=2,
+        help="""Used only when --method is rnn-lm.
+        It specifies the number of checkpoints to average.
+        """,
+    )
+
+    parser.add_argument(
+        "--rnn-lm-embedding-dim",
+        type=int,
+        default=2048,
+        help="Embedding dim of the model",
+    )
+
+    parser.add_argument(
+        "--rnn-lm-hidden-dim",
+        type=int,
+        default=2048,
+        help="Hidden dim of the model",
+    )
+
+    parser.add_argument(
+        "--rnn-lm-num-layers",
+        type=int,
+        default=4,
+        help="Number of RNN layers the model",
+    )
+    parser.add_argument(
+        "--rnn-lm-tie-weights",
+        type=str2bool,
+        default=False,
+        help="""True to share the weights between the input embedding layer and the
+        last output linear layer
+        """,
+    )
+
+    return parser
+
+
+def get_params() -> AttributeDict:
+    params = AttributeDict(
+        {
+            # parameters for conformer
+            "subsampling_factor": 4,
+            "vgg_frontend": False,
+            "use_feat_batchnorm": True,
+            "feature_dim": 80,
+            "nhead": 8,
+            "attention_dim": 512,
+            "num_decoder_layers": 6,
+            # parameters for decoding
+            "search_beam": 20,
+            "output_beam": 8,
+            "min_active_states": 30,
+            "max_active_states": 10000,
+            "use_double_scores": True,
+            "env_info": get_env_info(),
+        }
+    )
+    return params
+
+
+def decode_one_batch(
+    params: AttributeDict,
+    model: nn.Module,
+    rnn_lm_model: Optional[nn.Module],
+    HLG: Optional[k2.Fsa],
+    H: Optional[k2.Fsa],
+    bpe_model: Optional[spm.SentencePieceProcessor],
+    batch: dict,
+    word_table: k2.SymbolTable,
+    sos_id: int,
+    eos_id: int,
+    G: Optional[k2.Fsa] = None,
+) -> Dict[str, List[List[str]]]:
+    """Decode one batch and return the result in a dict. The dict has the
+    following format:
+
+        - key: It indicates the setting used for decoding. For example,
+               if no rescoring is used, the key is the string `no_rescore`.
+               If LM rescoring is used, the key is the string `lm_scale_xxx`,
+               where `xxx` is the value of `lm_scale`. An example key is
+               `lm_scale_0.7`
+        - value: It contains the decoding result. `len(value)` equals to
+                 batch size. `value[i]` is the decoding result for the i-th
+                 utterance in the given batch.
+    Args:
+      params:
+        It's the return value of :func:`get_params`.
+
+        - params.method is "1best", it uses 1best decoding without LM rescoring.
+        - params.method is "nbest", it uses nbest decoding without LM rescoring.
+        - params.method is "nbest-rescoring", it uses nbest LM rescoring.
+        - params.method is "whole-lattice-rescoring", it uses whole lattice LM
+          rescoring.
+
+      model:
+        The neural model.
+      rnn_lm_model:
+        The neural model for RNN LM.
+      HLG:
+        The decoding graph. Used only when params.method is NOT ctc-decoding.
+      H:
+        The ctc topo. Used only when params.method is ctc-decoding.
+      bpe_model:
+        The BPE model. Used only when params.method is ctc-decoding.
+      batch:
+        It is the return value from iterating
+        `lhotse.dataset.K2SpeechRecognitionDataset`. See its documentation
+        for the format of the `batch`.
+      word_table:
+        The word symbol table.
+      sos_id:
+        The token ID of the SOS.
+      eos_id:
+        The token ID of the EOS.
+      G:
+        An LM. It is not None when params.method is "nbest-rescoring"
+        or "whole-lattice-rescoring". In general, the G in HLG
+        is a 3-gram LM, while this G is a 4-gram LM.
+    Returns:
+      Return the decoding result. See above description for the format of
+      the returned dict. Note: If it decodes to nothing, then return None.
+    """
+    if HLG is not None:
+        device = HLG.device
+    else:
+        device = H.device
+    feature = batch["inputs"]
+    assert feature.ndim == 3
+    feature = feature.to(device)
+    # at entry, feature is (N, T, C)
+
+    supervisions = batch["supervisions"]
+
+    nnet_output, memory, memory_key_padding_mask = model(feature, supervisions)
+    # nnet_output is (N, T, C)
+
+    supervision_segments = torch.stack(
+        (
+            supervisions["sequence_idx"],
+            supervisions["start_frame"] // params.subsampling_factor,
+            supervisions["num_frames"] // params.subsampling_factor,
+        ),
+        1,
+    ).to(torch.int32)
+
+    if H is None:
+        assert HLG is not None
+        decoding_graph = HLG
+    else:
+        assert HLG is None
+        assert bpe_model is not None
+        decoding_graph = H
+
+    lattice = get_lattice(
+        nnet_output=nnet_output,
+        decoding_graph=decoding_graph,
+        supervision_segments=supervision_segments,
+        search_beam=params.search_beam,
+        output_beam=params.output_beam,
+        min_active_states=params.min_active_states,
+        max_active_states=params.max_active_states,
+        subsampling_factor=params.subsampling_factor,
+    )
+
+    if params.method == "ctc-decoding":
+        best_path = one_best_decoding(
+            lattice=lattice, use_double_scores=params.use_double_scores
+        )
+        # Note: `best_path.aux_labels` contains token IDs, not word IDs
+        # since we are using H, not HLG here.
+        #
+        # token_ids is a lit-of-list of IDs
+        token_ids = get_texts(best_path)
+
+        # hyps is a list of str, e.g., ['xxx yyy zzz', ...]
+        hyps = bpe_model.decode(token_ids)
+
+        # hyps is a list of list of str, e.g., [['xxx', 'yyy', 'zzz'], ... ]
+        hyps = [s.split() for s in hyps]
+        key = "ctc-decoding"
+        return {key: hyps}
+
+    if params.method == "nbest-oracle":
+        # Note: You can also pass rescored lattices to it.
+        # We choose the HLG decoded lattice for speed reasons
+        # as HLG decoding is faster and the oracle WER
+        # is only slightly worse than that of rescored lattices.
+        best_path = nbest_oracle(
+            lattice=lattice,
+            num_paths=params.num_paths,
+            ref_texts=supervisions["text"],
+            word_table=word_table,
+            nbest_scale=params.nbest_scale,
+            oov="<UNK>",
+        )
+        hyps = get_texts(best_path)
+        hyps = [[word_table[i] for i in ids] for ids in hyps]
+        key = f"oracle_{params.num_paths}_nbest_scale_{params.nbest_scale}"  # noqa
+        return {key: hyps}
+
+    if params.method in ["1best", "nbest"]:
+        if params.method == "1best":
+            best_path = one_best_decoding(
+                lattice=lattice, use_double_scores=params.use_double_scores
+            )
+            key = "no_rescore"
+        else:
+            best_path = nbest_decoding(
+                lattice=lattice,
+                num_paths=params.num_paths,
+                use_double_scores=params.use_double_scores,
+                nbest_scale=params.nbest_scale,
+            )
+            key = f"no_rescore-nbest-scale-{params.nbest_scale}-{params.num_paths}"  # noqa
+
+        hyps = get_texts(best_path)
+        hyps = [[word_table[i] for i in ids] for ids in hyps]
+        return {key: hyps}
+
+    assert params.method in [
+        "nbest-rescoring",
+        "whole-lattice-rescoring",
+        "attention-decoder",
+        "rnn-lm",
+    ]
+
+    lm_scale_list = [0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7]
+    lm_scale_list += [0.8, 0.9, 1.0, 1.1, 1.2, 1.3]
+    lm_scale_list += [1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0]
+
+    if params.method == "nbest-rescoring":
+        best_path_dict = rescore_with_n_best_list(
+            lattice=lattice,
+            G=G,
+            num_paths=params.num_paths,
+            lm_scale_list=lm_scale_list,
+            nbest_scale=params.nbest_scale,
+        )
+    elif params.method == "whole-lattice-rescoring":
+        best_path_dict = rescore_with_whole_lattice(
+            lattice=lattice,
+            G_with_epsilon_loops=G,
+            lm_scale_list=lm_scale_list,
+        )
+    elif params.method == "attention-decoder":
+        # lattice uses a 3-gram Lm. We rescore it with a 4-gram LM.
+        rescored_lattice = rescore_with_whole_lattice(
+            lattice=lattice,
+            G_with_epsilon_loops=G,
+            lm_scale_list=None,
+        )
+
+        best_path_dict = rescore_with_attention_decoder(
+            lattice=rescored_lattice,
+            num_paths=params.num_paths,
+            model=model,
+            memory=memory,
+            memory_key_padding_mask=memory_key_padding_mask,
+            sos_id=sos_id,
+            eos_id=eos_id,
+            nbest_scale=params.nbest_scale,
+        )
+    elif params.method == "rnn-lm":
+        # lattice uses a 3-gram Lm. We rescore it with a 4-gram LM.
+        rescored_lattice = rescore_with_whole_lattice(
+            lattice=lattice,
+            G_with_epsilon_loops=G,
+            lm_scale_list=None,
+        )
+
+        best_path_dict = rescore_with_rnn_lm(
+            lattice=rescored_lattice,
+            num_paths=params.num_paths,
+            rnn_lm_model=rnn_lm_model,
+            model=model,
+            memory=memory,
+            memory_key_padding_mask=memory_key_padding_mask,
+            sos_id=sos_id,
+            eos_id=eos_id,
+            blank_id=0,
+            nbest_scale=params.nbest_scale,
+        )
+    else:
+        assert False, f"Unsupported decoding method: {params.method}"
+
+    ans = dict()
+    if best_path_dict is not None:
+        for lm_scale_str, best_path in best_path_dict.items():
+            hyps = get_texts(best_path)
+            hyps = [[word_table[i] for i in ids] for ids in hyps]
+            ans[lm_scale_str] = hyps
+    else:
+        ans = None
+    return ans
+
+
+def decode_dataset(
+    dl: torch.utils.data.DataLoader,
+    params: AttributeDict,
+    model: nn.Module,
+    rnn_lm_model: Optional[nn.Module],
+    HLG: Optional[k2.Fsa],
+    H: Optional[k2.Fsa],
+    bpe_model: Optional[spm.SentencePieceProcessor],
+    word_table: k2.SymbolTable,
+    sos_id: int,
+    eos_id: int,
+    G: Optional[k2.Fsa] = None,
+) -> Dict[str, List[Tuple[str, List[str], List[str]]]]:
+    """Decode dataset.
+
+    Args:
+      dl:
+        PyTorch's dataloader containing the dataset to decode.
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The neural model.
+      rnn_lm_model:
+        The neural model for RNN LM.
+      HLG:
+        The decoding graph. Used only when params.method is NOT ctc-decoding.
+      H:
+        The ctc topo. Used only when params.method is ctc-decoding.
+      bpe_model:
+        The BPE model. Used only when params.method is ctc-decoding.
+      word_table:
+        It is the word symbol table.
+      sos_id:
+        The token ID for SOS.
+      eos_id:
+        The token ID for EOS.
+      G:
+        An LM. It is not None when params.method is "nbest-rescoring"
+        or "whole-lattice-rescoring". In general, the G in HLG
+        is a 3-gram LM, while this G is a 4-gram LM.
+    Returns:
+      Return a dict, whose key may be "no-rescore" if no LM rescoring
+      is used, or it may be "lm_scale_0.7" if LM rescoring is used.
+      Its value is a list of tuples. Each tuple contains two elements:
+      The first is the reference transcript, and the second is the
+      predicted result.
+    """
+    num_cuts = 0
+
+    try:
+        num_batches = len(dl)
+    except TypeError:
+        num_batches = "?"
+
+    results = defaultdict(list)
+    for batch_idx, batch in enumerate(dl):
+        texts = batch["supervisions"]["text"]
+        cut_ids = [cut.id for cut in batch["supervisions"]["cut"]]
+
+        hyps_dict = decode_one_batch(
+            params=params,
+            model=model,
+            rnn_lm_model=rnn_lm_model,
+            HLG=HLG,
+            H=H,
+            bpe_model=bpe_model,
+            batch=batch,
+            word_table=word_table,
+            G=G,
+            sos_id=sos_id,
+            eos_id=eos_id,
+        )
+
+        if hyps_dict is not None:
+            for lm_scale, hyps in hyps_dict.items():
+                this_batch = []
+                assert len(hyps) == len(texts)
+                for cut_id, hyp_words, ref_text in zip(cut_ids, hyps, texts):
+                    ref_words = ref_text.split()
+                    this_batch.append((cut_id, ref_words, hyp_words))
+
+                results[lm_scale].extend(this_batch)
+        else:
+            assert len(results) > 0, "It should not decode to empty in the first batch!"
+            this_batch = []
+            hyp_words = []
+            for ref_text in texts:
+                ref_words = ref_text.split()
+                this_batch.append((ref_words, hyp_words))
+
+            for lm_scale in results.keys():
+                results[lm_scale].extend(this_batch)
+
+        num_cuts += len(texts)
+
+        if batch_idx % 100 == 0:
+            batch_str = f"{batch_idx}/{num_batches}"
+
+            logging.info(f"batch {batch_str}, cuts processed until now is {num_cuts}")
+    return results
+
+
+def save_results(
+    params: AttributeDict,
+    test_set_name: str,
+    results_dict: Dict[str, List[Tuple[str, List[int], List[int]]]],
+):
+    if params.method in ("attention-decoder", "rnn-lm"):
+        # Set it to False since there are too many logs.
+        enable_log = False
+    else:
+        enable_log = True
+    test_set_wers = dict()
+    for key, results in results_dict.items():
+        recog_path = params.exp_dir / f"recogs-{test_set_name}-{key}.txt"
+        results = sorted(results)
+        store_transcripts(filename=recog_path, texts=results)
+        if enable_log:
+            logging.info(f"The transcripts are stored in {recog_path}")
+
+        # The following prints out WERs, per-word error statistics and aligned
+        # ref/hyp pairs.
+        errs_filename = params.exp_dir / f"errs-{test_set_name}-{key}.txt"
+        with open(errs_filename, "w") as f:
+            wer = write_error_stats(
+                f, f"{test_set_name}-{key}", results, enable_log=enable_log
+            )
+            test_set_wers[key] = wer
+
+        if enable_log:
+            logging.info("Wrote detailed error stats to {}".format(errs_filename))
+
+    test_set_wers = sorted(test_set_wers.items(), key=lambda x: x[1])
+    errs_info = params.exp_dir / f"wer-summary-{test_set_name}.txt"
+    with open(errs_info, "w") as f:
+        print("settings\tWER", file=f)
+        for key, val in test_set_wers:
+            print("{}\t{}".format(key, val), file=f)
+
+    s = "\nFor {}, WER of different settings are:\n".format(test_set_name)
+    note = "\tbest for {}".format(test_set_name)
+    for key, val in test_set_wers:
+        s += "{}\t{}{}\n".format(key, val, note)
+        note = ""
+    logging.info(s)
+
+
+@torch.no_grad()
+def main():
+    parser = get_parser()
+    LibriSpeechAsrDataModule.add_arguments(parser)
+    args = parser.parse_args()
+    args.exp_dir = Path(args.exp_dir)
+    args.lang_dir = Path(args.lang_dir)
+    args.lm_dir = Path(args.lm_dir)
+
+    params = get_params()
+    params.update(vars(args))
+
+    setup_logger(f"{params.exp_dir}/log-{params.method}/log-decode")
+    logging.info("Decoding started")
+    logging.info(params)
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", 0)
+
+    logging.info(f"device: {device}")
+
+    graph_compiler = BpeCtcTrainingGraphCompiler(
+        params.lang_dir,
+        device=device,
+        sos_token="<sos/eos>",
+        eos_token="<sos/eos>",
+    )
+    sos_id = graph_compiler.sos_id
+    eos_id = graph_compiler.eos_id
+
+    params.num_classes = num_classes
+    params.sos_id = sos_id
+    params.eos_id = eos_id
+
+    if params.method == "ctc-decoding":
+        HLG = None
+        H = k2.ctc_topo(
+            max_token=max_token_id,
+            modified=False,
+            device=device,
+        )
+        bpe_model = spm.SentencePieceProcessor()
+        bpe_model.load(str(params.lang_dir / "bpe.model"))
+    else:
+        H = None
+        bpe_model = None
+        HLG = k2.Fsa.from_dict(
+            torch.load(f"{params.lang_dir}/HLG.pt", map_location=device)
+        )
+        assert HLG.requires_grad is False
+
+        if not hasattr(HLG, "lm_scores"):
+            HLG.lm_scores = HLG.scores.clone()
+
+    if params.method in (
+        "nbest-rescoring",
+        "whole-lattice-rescoring",
+        "attention-decoder",
+        "rnn-lm",
+    ):
+        if not (params.lm_dir / "G_4_gram.pt").is_file():
+            logging.info("Loading G_4_gram.fst.txt")
+            logging.warning("It may take 8 minutes.")
+            with open(params.lm_dir / "G_4_gram.fst.txt") as f:
+                first_word_disambig_id = lexicon.word_table["#0"]
+
+                G = k2.Fsa.from_openfst(f.read(), acceptor=False)
+                # G.aux_labels is not needed in later computations, so
+                # remove it here.
+                del G.aux_labels
+                # CAUTION: The following line is crucial.
+                # Arcs entering the back-off state have label equal to #0.
+                # We have to change it to 0 here.
+                G.labels[G.labels >= first_word_disambig_id] = 0
+                # See https://github.com/k2-fsa/k2/issues/874
+                # for why we need to set G.properties to None
+                G.__dict__["_properties"] = None
+                G = k2.Fsa.from_fsas([G]).to(device)
+                G = k2.arc_sort(G)
+                # Save a dummy value so that it can be loaded in C++.
+                # See https://github.com/pytorch/pytorch/issues/67902
+                # for why we need to do this.
+                G.dummy = 1
+
+                torch.save(G.as_dict(), params.lm_dir / "G_4_gram.pt")
+        else:
+            logging.info("Loading pre-compiled G_4_gram.pt")
+            d = torch.load(params.lm_dir / "G_4_gram.pt", map_location=device)
+            G = k2.Fsa.from_dict(d)
+
+        if params.method in [
+            "whole-lattice-rescoring",
+            "attention-decoder",
+            "rnn-lm",
+        ]:
+            # Add epsilon self-loops to G as we will compose
+            # it with the whole lattice later
+            G = k2.add_epsilon_self_loops(G)
+            G = k2.arc_sort(G)
+            G = G.to(device)
+
+        # G.lm_scores is used to replace HLG.lm_scores during
+        # LM rescoring.
+        G.lm_scores = G.scores.clone()
+    else:
+        G = None
+
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=params.vgg_frontend,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+
+    if params.avg == 1:
+        load_checkpoint(f"{params.exp_dir}/epoch-{params.epoch}.pt", model)
+    else:
+        model = load_averaged_model(
+            params.exp_dir, model, params.epoch, params.avg, device
+        )
+
+    model.to(device)
+    model.eval()
+    num_param = sum([p.numel() for p in model.parameters()])
+    logging.info(f"Number of model parameters: {num_param}")
+
+    rnn_lm_model = None
+    if params.method == "rnn-lm":
+        rnn_lm_model = RnnLmModel(
+            vocab_size=params.num_classes,
+            embedding_dim=params.rnn_lm_embedding_dim,
+            hidden_dim=params.rnn_lm_hidden_dim,
+            num_layers=params.rnn_lm_num_layers,
+            tie_weights=params.rnn_lm_tie_weights,
+        )
+        if params.rnn_lm_avg == 1:
+            load_checkpoint(
+                f"{params.rnn_lm_exp_dir}/epoch-{params.rnn_lm_epoch}.pt",
+                rnn_lm_model,
+            )
+            rnn_lm_model.to(device)
+        else:
+            rnn_lm_model = load_averaged_model(
+                params.rnn_lm_exp_dir,
+                rnn_lm_model,
+                params.rnn_lm_epoch,
+                params.rnn_lm_avg,
+                device,
+            )
+        rnn_lm_model.eval()
+
+    # we need cut ids to display recognition results.
+    args.return_cuts = True
+    librispeech = LibriSpeechAsrDataModule(args)
+
+    test_clean_cuts = librispeech.test_mucs_cuts()
+
+    test_clean_dl = librispeech.test_dataloaders(test_clean_cuts)
+
+    test_sets = ["test"]
+    test_dl = [test_clean_dl]
+
+    for test_set, test_dl in zip(test_sets, test_dl):
+        results_dict = decode_dataset(
+            dl=test_dl,
+            params=params,
+            model=model,
+            rnn_lm_model=rnn_lm_model,
+            HLG=HLG,
+            H=H,
+            bpe_model=bpe_model,
+            word_table=lexicon.word_table,
+            G=G,
+            sos_id=sos_id,
+            eos_id=eos_id,
+        )
+
+        save_results(params=params, test_set_name=test_set, results_dict=results_dict)
+
+    logging.info("Done!")
+
+
+torch.set_num_threads(1)
+torch.set_num_interop_threads(1)
+
+if __name__ == "__main__":
+    main()

egs/mucs/ASR/conformer_ctc/export.py

@@ -0,0 +1,163 @@
+#!/usr/bin/env python3
+#
+# Copyright 2021 Xiaomi Corporation (Author: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# This script converts several saved checkpoints
+# to a single one using model averaging.
+
+import argparse
+import logging
+from pathlib import Path
+
+import torch
+from conformer import Conformer
+
+from icefall.checkpoint import average_checkpoints, load_checkpoint
+from icefall.lexicon import Lexicon
+from icefall.utils import AttributeDict, str2bool
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--epoch",
+        type=int,
+        default=34,
+        help="It specifies the checkpoint to use for decoding."
+        "Note: Epoch counts from 0.",
+    )
+
+    parser.add_argument(
+        "--avg",
+        type=int,
+        default=20,
+        help="Number of checkpoints to average. Automatically select "
+        "consecutive checkpoints before the checkpoint specified by "
+        "'--epoch'. ",
+    )
+
+    parser.add_argument(
+        "--exp-dir",
+        type=str,
+        default="conformer_ctc/exp",
+        help="""It specifies the directory where all training related
+        files, e.g., checkpoints, log, etc, are saved
+        """,
+    )
+
+    parser.add_argument(
+        "--lang-dir",
+        type=str,
+        default="data/lang_bpe_500",
+        help="""It contains language related input files such as "lexicon.txt"
+        """,
+    )
+
+    parser.add_argument(
+        "--jit",
+        type=str2bool,
+        default=True,
+        help="""True to save a model after applying torch.jit.script.
+        """,
+    )
+
+    return parser
+
+
+def get_params() -> AttributeDict:
+    params = AttributeDict(
+        {
+            "feature_dim": 80,
+            "subsampling_factor": 4,
+            "use_feat_batchnorm": True,
+            "attention_dim": 512,
+            "nhead": 8,
+            "num_decoder_layers": 6,
+        }
+    )
+    return params
+
+
+def main():
+    args = get_parser().parse_args()
+    args.exp_dir = Path(args.exp_dir)
+    args.lang_dir = Path(args.lang_dir)
+
+    params = get_params()
+    params.update(vars(args))
+
+    logging.info(params)
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", 0)
+
+    logging.info(f"device: {device}")
+
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=False,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+    model.to(device)
+
+    if params.avg == 1:
+        load_checkpoint(f"{params.exp_dir}/epoch-{params.epoch}.pt", model)
+    else:
+        start = params.epoch - params.avg + 1
+        filenames = []
+        for i in range(start, params.epoch + 1):
+            if start >= 0:
+                filenames.append(f"{params.exp_dir}/epoch-{i}.pt")
+        logging.info(f"averaging {filenames}")
+        model.load_state_dict(average_checkpoints(filenames))
+
+    model.to("cpu")
+    model.eval()
+
+    if params.jit:
+        logging.info("Using torch.jit.script")
+        model = torch.jit.script(model)
+        filename = params.exp_dir / "cpu_jit.pt"
+        model.save(str(filename))
+        logging.info(f"Saved to {filename}")
+    else:
+        logging.info("Not using torch.jit.script")
+        # Save it using a format so that it can be loaded
+        # by :func:`load_checkpoint`
+        filename = params.exp_dir / "pretrained.pt"
+        torch.save({"model": model.state_dict()}, str(filename))
+        logging.info(f"Saved to {filename}")
+
+
+if __name__ == "__main__":
+    formatter = "%(asctime)s %(levelname)s [%(filename)s:%(lineno)d] %(message)s"
+
+    logging.basicConfig(format=formatter, level=logging.INFO)
+    main()

egs/mucs/ASR/conformer_ctc/label_smoothing.py

@@ -0,0 +1,109 @@
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import torch
+
+
+class LabelSmoothingLoss(torch.nn.Module):
+    """
+    Implement the LabelSmoothingLoss proposed in the following paper
+    https://arxiv.org/pdf/1512.00567.pdf
+    (Rethinking the Inception Architecture for Computer Vision)
+
+    """
+
+    def __init__(
+        self,
+        ignore_index: int = -1,
+        label_smoothing: float = 0.1,
+        reduction: str = "sum",
+    ) -> None:
+        """
+        Args:
+          ignore_index:
+            ignored class id
+          label_smoothing:
+            smoothing rate (0.0 means the conventional cross entropy loss)
+          reduction:
+            It has the same meaning as the reduction in
+            `torch.nn.CrossEntropyLoss`. It can be one of the following three
+            values: (1) "none": No reduction will be applied. (2) "mean": the
+            mean of the output is taken. (3) "sum": the output will be summed.
+        """
+        super().__init__()
+        assert 0.0 <= label_smoothing < 1.0, f"{label_smoothing}"
+        assert reduction in ("none", "sum", "mean"), reduction
+        self.ignore_index = ignore_index
+        self.label_smoothing = label_smoothing
+        self.reduction = reduction
+
+    def forward(self, x: torch.Tensor, target: torch.Tensor) -> torch.Tensor:
+        """
+        Compute loss between x and target.
+
+        Args:
+          x:
+            prediction of dimension
+            (batch_size, input_length, number_of_classes).
+          target:
+            target masked with self.ignore_index of
+            dimension (batch_size, input_length).
+
+        Returns:
+          A scalar tensor containing the loss without normalization.
+        """
+        assert x.ndim == 3
+        assert target.ndim == 2
+        assert x.shape[:2] == target.shape
+        num_classes = x.size(-1)
+        x = x.reshape(-1, num_classes)
+        # Now x is of shape (N*T, C)
+
+        # We don't want to change target in-place below,
+        # so we make a copy of it here
+        target = target.clone().reshape(-1)
+
+        ignored = target == self.ignore_index
+
+        # See https://github.com/k2-fsa/icefall/issues/240
+        # and https://github.com/k2-fsa/icefall/issues/297
+        # for why we don't use target[ignored] = 0 here
+        target = torch.where(ignored, torch.zeros_like(target), target)
+
+        true_dist = torch.nn.functional.one_hot(target, num_classes=num_classes).to(x)
+
+        true_dist = (
+            true_dist * (1 - self.label_smoothing) + self.label_smoothing / num_classes
+        )
+
+        # Set the value of ignored indexes to 0
+        #
+        # See https://github.com/k2-fsa/icefall/issues/240
+        # and https://github.com/k2-fsa/icefall/issues/297
+        # for why we don't use true_dist[ignored] = 0 here
+        true_dist = torch.where(
+            ignored.unsqueeze(1).repeat(1, true_dist.shape[1]),
+            torch.zeros_like(true_dist),
+            true_dist,
+        )
+
+        loss = -1 * (torch.log_softmax(x, dim=1) * true_dist)
+        if self.reduction == "sum":
+            return loss.sum()
+        elif self.reduction == "mean":
+            return loss.sum() / (~ignored).sum()
+        else:
+            return loss.sum(dim=-1)

egs/mucs/ASR/conformer_ctc/pretrained.py

@@ -0,0 +1,430 @@
+#!/usr/bin/env python3
+# Copyright      2021  Xiaomi Corp.        (authors: Fangjun Kuang,
+#                                                    Mingshuang Luo)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import argparse
+import logging
+import math
+from typing import List
+
+import k2
+import kaldifeat
+import sentencepiece as spm
+import torch
+import torchaudio
+from conformer import Conformer
+from torch.nn.utils.rnn import pad_sequence
+
+from icefall.decode import (
+    get_lattice,
+    one_best_decoding,
+    rescore_with_attention_decoder,
+    rescore_with_whole_lattice,
+)
+from icefall.utils import AttributeDict, get_texts
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--checkpoint",
+        type=str,
+        required=True,
+        help="Path to the checkpoint. "
+        "The checkpoint is assumed to be saved by "
+        "icefall.checkpoint.save_checkpoint().",
+    )
+
+    parser.add_argument(
+        "--words-file",
+        type=str,
+        help="""Path to words.txt.
+        Used only when method is not ctc-decoding.
+        """,
+    )
+
+    parser.add_argument(
+        "--HLG",
+        type=str,
+        help="""Path to HLG.pt.
+        Used only when method is not ctc-decoding.
+        """,
+    )
+
+    parser.add_argument(
+        "--bpe-model",
+        type=str,
+        help="""Path to bpe.model.
+        Used only when method is ctc-decoding.
+        """,
+    )
+
+    parser.add_argument(
+        "--method",
+        type=str,
+        default="1best",
+        help="""Decoding method.
+        Possible values are:
+        (0) ctc-decoding - Use CTC decoding. It uses a sentence
+            piece model, i.e., lang_dir/bpe.model, to convert
+            word pieces to words. It needs neither a lexicon
+            nor an n-gram LM.
+        (1) 1best - Use the best path as decoding output. Only
+            the transformer encoder output is used for decoding.
+            We call it HLG decoding.
+        (2) whole-lattice-rescoring - Use an LM to rescore the
+            decoding lattice and then use 1best to decode the
+            rescored lattice.
+            We call it HLG decoding + n-gram LM rescoring.
+        (3) attention-decoder - Extract n paths from the rescored
+            lattice and use the transformer attention decoder for
+            rescoring.
+            We call it HLG decoding + n-gram LM rescoring + attention
+            decoder rescoring.
+        """,
+    )
+
+    parser.add_argument(
+        "--G",
+        type=str,
+        help="""An LM for rescoring.
+        Used only when method is
+        whole-lattice-rescoring or attention-decoder.
+        It's usually a 4-gram LM.
+        """,
+    )
+
+    parser.add_argument(
+        "--num-paths",
+        type=int,
+        default=100,
+        help="""
+        Used only when method is attention-decoder.
+        It specifies the size of n-best list.""",
+    )
+
+    parser.add_argument(
+        "--ngram-lm-scale",
+        type=float,
+        default=1.3,
+        help="""
+        Used only when method is whole-lattice-rescoring and attention-decoder.
+        It specifies the scale for n-gram LM scores.
+        (Note: You need to tune it on a dataset.)
+        """,
+    )
+
+    parser.add_argument(
+        "--attention-decoder-scale",
+        type=float,
+        default=1.2,
+        help="""
+        Used only when method is attention-decoder.
+        It specifies the scale for attention decoder scores.
+        (Note: You need to tune it on a dataset.)
+        """,
+    )
+
+    parser.add_argument(
+        "--nbest-scale",
+        type=float,
+        default=0.5,
+        help="""
+        Used only when method is attention-decoder.
+        It specifies the scale for lattice.scores when
+        extracting n-best lists. A smaller value results in
+        more unique number of paths with the risk of missing
+        the best path.
+        """,
+    )
+
+    parser.add_argument(
+        "--sos-id",
+        type=int,
+        default=1,
+        help="""
+        Used only when method is attention-decoder.
+        It specifies ID for the SOS token.
+        """,
+    )
+
+    parser.add_argument(
+        "--num-classes",
+        type=int,
+        default=500,
+        help="""
+        Vocab size in the BPE model.
+        """,
+    )
+
+    parser.add_argument(
+        "--eos-id",
+        type=int,
+        default=1,
+        help="""
+        Used only when method is attention-decoder.
+        It specifies ID for the EOS token.
+        """,
+    )
+
+    parser.add_argument(
+        "sound_files",
+        type=str,
+        nargs="+",
+        help="The input sound file(s) to transcribe. "
+        "Supported formats are those supported by torchaudio.load(). "
+        "For example, wav and flac are supported. "
+        "The sample rate has to be 16kHz.",
+    )
+
+    return parser
+
+
+def get_params() -> AttributeDict:
+    params = AttributeDict(
+        {
+            "sample_rate": 16000,
+            # parameters for conformer
+            "subsampling_factor": 4,
+            "vgg_frontend": False,
+            "use_feat_batchnorm": True,
+            "feature_dim": 80,
+            "nhead": 8,
+            "attention_dim": 512,
+            "num_decoder_layers": 6,
+            # parameters for decoding
+            "search_beam": 20,
+            "output_beam": 8,
+            "min_active_states": 30,
+            "max_active_states": 10000,
+            "use_double_scores": True,
+        }
+    )
+    return params
+
+
+def read_sound_files(
+    filenames: List[str], expected_sample_rate: float
+) -> List[torch.Tensor]:
+    """Read a list of sound files into a list 1-D float32 torch tensors.
+    Args:
+      filenames:
+        A list of sound filenames.
+      expected_sample_rate:
+        The expected sample rate of the sound files.
+    Returns:
+      Return a list of 1-D float32 torch tensors.
+    """
+    ans = []
+    for f in filenames:
+        wave, sample_rate = torchaudio.load(f)
+        assert (
+            sample_rate == expected_sample_rate
+        ), f"expected sample rate: {expected_sample_rate}. Given: {sample_rate}"
+        # We use only the first channel
+        ans.append(wave[0])
+    return ans
+
+
+def main():
+    parser = get_parser()
+    args = parser.parse_args()
+
+    params = get_params()
+    if args.method != "attention-decoder":
+        # to save memory as the attention decoder
+        # will not be used
+        params.num_decoder_layers = 0
+
+    params.update(vars(args))
+    logging.info(f"{params}")
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", 0)
+
+    logging.info(f"device: {device}")
+
+    logging.info("Creating model")
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=params.num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=params.vgg_frontend,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+
+    checkpoint = torch.load(args.checkpoint, map_location="cpu")
+    model.load_state_dict(checkpoint["model"], strict=False)
+    model.to(device)
+    model.eval()
+
+    logging.info("Constructing Fbank computer")
+    opts = kaldifeat.FbankOptions()
+    opts.device = device
+    opts.frame_opts.dither = 0
+    opts.frame_opts.snip_edges = False
+    opts.frame_opts.samp_freq = params.sample_rate
+    opts.mel_opts.num_bins = params.feature_dim
+
+    fbank = kaldifeat.Fbank(opts)
+
+    logging.info(f"Reading sound files: {params.sound_files}")
+    waves = read_sound_files(
+        filenames=params.sound_files, expected_sample_rate=params.sample_rate
+    )
+    waves = [w.to(device) for w in waves]
+
+    logging.info("Decoding started")
+    features = fbank(waves)
+
+    features = pad_sequence(features, batch_first=True, padding_value=math.log(1e-10))
+
+    # Note: We don't use key padding mask for attention during decoding
+    with torch.no_grad():
+        nnet_output, memory, memory_key_padding_mask = model(features)
+
+    batch_size = nnet_output.shape[0]
+    supervision_segments = torch.tensor(
+        [[i, 0, nnet_output.shape[1]] for i in range(batch_size)],
+        dtype=torch.int32,
+    )
+
+    if params.method == "ctc-decoding":
+        logging.info("Use CTC decoding")
+        bpe_model = spm.SentencePieceProcessor()
+        bpe_model.load(params.bpe_model)
+        max_token_id = params.num_classes - 1
+
+        H = k2.ctc_topo(
+            max_token=max_token_id,
+            modified=params.num_classes > 500,
+            device=device,
+        )
+
+        lattice = get_lattice(
+            nnet_output=nnet_output,
+            decoding_graph=H,
+            supervision_segments=supervision_segments,
+            search_beam=params.search_beam,
+            output_beam=params.output_beam,
+            min_active_states=params.min_active_states,
+            max_active_states=params.max_active_states,
+            subsampling_factor=params.subsampling_factor,
+        )
+
+        best_path = one_best_decoding(
+            lattice=lattice, use_double_scores=params.use_double_scores
+        )
+        token_ids = get_texts(best_path)
+        hyps = bpe_model.decode(token_ids)
+        hyps = [s.split() for s in hyps]
+    elif params.method in [
+        "1best",
+        "whole-lattice-rescoring",
+        "attention-decoder",
+    ]:
+        logging.info(f"Loading HLG from {params.HLG}")
+        HLG = k2.Fsa.from_dict(torch.load(params.HLG, map_location="cpu"))
+        HLG = HLG.to(device)
+        if not hasattr(HLG, "lm_scores"):
+            # For whole-lattice-rescoring and attention-decoder
+            HLG.lm_scores = HLG.scores.clone()
+
+        if params.method in [
+            "whole-lattice-rescoring",
+            "attention-decoder",
+        ]:
+            logging.info(f"Loading G from {params.G}")
+            G = k2.Fsa.from_dict(torch.load(params.G, map_location="cpu"))
+            # Add epsilon self-loops to G as we will compose
+            # it with the whole lattice later
+            G = G.to(device)
+            G = k2.add_epsilon_self_loops(G)
+            G = k2.arc_sort(G)
+            G.lm_scores = G.scores.clone()
+
+        lattice = get_lattice(
+            nnet_output=nnet_output,
+            decoding_graph=HLG,
+            supervision_segments=supervision_segments,
+            search_beam=params.search_beam,
+            output_beam=params.output_beam,
+            min_active_states=params.min_active_states,
+            max_active_states=params.max_active_states,
+            subsampling_factor=params.subsampling_factor,
+        )
+
+        if params.method == "1best":
+            logging.info("Use HLG decoding")
+            best_path = one_best_decoding(
+                lattice=lattice, use_double_scores=params.use_double_scores
+            )
+        elif params.method == "whole-lattice-rescoring":
+            logging.info("Use HLG decoding + LM rescoring")
+            best_path_dict = rescore_with_whole_lattice(
+                lattice=lattice,
+                G_with_epsilon_loops=G,
+                lm_scale_list=[params.ngram_lm_scale],
+            )
+            best_path = next(iter(best_path_dict.values()))
+        elif params.method == "attention-decoder":
+            logging.info("Use HLG + LM rescoring + attention decoder rescoring")
+            rescored_lattice = rescore_with_whole_lattice(
+                lattice=lattice, G_with_epsilon_loops=G, lm_scale_list=None
+            )
+            best_path_dict = rescore_with_attention_decoder(
+                lattice=rescored_lattice,
+                num_paths=params.num_paths,
+                model=model,
+                memory=memory,
+                memory_key_padding_mask=memory_key_padding_mask,
+                sos_id=params.sos_id,
+                eos_id=params.eos_id,
+                nbest_scale=params.nbest_scale,
+                ngram_lm_scale=params.ngram_lm_scale,
+                attention_scale=params.attention_decoder_scale,
+            )
+            best_path = next(iter(best_path_dict.values()))
+
+        hyps = get_texts(best_path)
+        word_sym_table = k2.SymbolTable.from_file(params.words_file)
+        hyps = [[word_sym_table[i] for i in ids] for ids in hyps]
+    else:
+        raise ValueError(f"Unsupported decoding method: {params.method}")
+
+    s = "\n"
+    for filename, hyp in zip(params.sound_files, hyps):
+        words = " ".join(hyp)
+        s += f"{filename}:\n{words}\n\n"
+    logging.info(s)
+
+    logging.info("Decoding Done")
+
+
+if __name__ == "__main__":
+    formatter = "%(asctime)s %(levelname)s [%(filename)s:%(lineno)d] %(message)s"
+
+    logging.basicConfig(format=formatter, level=logging.INFO)
+    main()

egs/mucs/ASR/conformer_ctc/subsampling.py

@@ -0,0 +1,153 @@
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import torch
+import torch.nn as nn
+
+
+class Conv2dSubsampling(nn.Module):
+    """Convolutional 2D subsampling (to 1/4 length).
+
+    Convert an input of shape (N, T, idim) to an output
+    with shape (N, T', odim), where
+    T' = ((T-1)//2 - 1)//2, which approximates T' == T//4
+
+    It is based on
+    https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/subsampling.py  # noqa
+    """
+
+    def __init__(self, idim: int, odim: int) -> None:
+        """
+        Args:
+          idim:
+            Input dim. The input shape is (N, T, idim).
+            Caution: It requires: T >=7, idim >=7
+          odim:
+            Output dim. The output shape is (N, ((T-1)//2 - 1)//2, odim)
+        """
+        assert idim >= 7
+        super().__init__()
+        self.conv = nn.Sequential(
+            nn.Conv2d(in_channels=1, out_channels=odim, kernel_size=3, stride=2),
+            nn.ReLU(),
+            nn.Conv2d(in_channels=odim, out_channels=odim, kernel_size=3, stride=2),
+            nn.ReLU(),
+        )
+        self.out = nn.Linear(odim * (((idim - 1) // 2 - 1) // 2), odim)
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """Subsample x.
+
+        Args:
+          x:
+            Its shape is (N, T, idim).
+
+        Returns:
+          Return a tensor of shape (N, ((T-1)//2 - 1)//2, odim)
+        """
+        # On entry, x is (N, T, idim)
+        x = x.unsqueeze(1)  # (N, T, idim) -> (N, 1, T, idim) i.e., (N, C, H, W)
+        x = self.conv(x)
+        # Now x is of shape (N, odim, ((T-1)//2 - 1)//2, ((idim-1)//2 - 1)//2)
+        b, c, t, f = x.size()
+        x = self.out(x.transpose(1, 2).contiguous().view(b, t, c * f))
+        # Now x is of shape (N, ((T-1)//2 - 1))//2, odim)
+        return x
+
+
+class VggSubsampling(nn.Module):
+    """Trying to follow the setup described in the following paper:
+    https://arxiv.org/pdf/1910.09799.pdf
+
+    This paper is not 100% explicit so I am guessing to some extent,
+    and trying to compare with other VGG implementations.
+
+    Convert an input of shape (N, T, idim) to an output
+    with shape (N, T', odim), where
+    T' = ((T-1)//2 - 1)//2, which approximates T' = T//4
+    """
+
+    def __init__(self, idim: int, odim: int) -> None:
+        """Construct a VggSubsampling object.
+
+        This uses 2 VGG blocks with 2 Conv2d layers each,
+        subsampling its input by a factor of 4 in the time dimensions.
+
+        Args:
+          idim:
+            Input dim. The input shape is (N, T, idim).
+            Caution: It requires: T >=7, idim >=7
+          odim:
+            Output dim. The output shape is (N, ((T-1)//2 - 1)//2, odim)
+        """
+        super().__init__()
+
+        cur_channels = 1
+        layers = []
+        block_dims = [32, 64]
+
+        # The decision to use padding=1 for the 1st convolution, then padding=0
+        # for the 2nd and for the max-pooling, and ceil_mode=True, was driven by
+        # a back-compatibility concern so that the number of frames at the
+        # output would be equal to:
+        #  (((T-1)//2)-1)//2.
+        # We can consider changing this by using padding=1 on the
+        # 2nd convolution, so the num-frames at the output would be T//4.
+        for block_dim in block_dims:
+            layers.append(
+                torch.nn.Conv2d(
+                    in_channels=cur_channels,
+                    out_channels=block_dim,
+                    kernel_size=3,
+                    padding=1,
+                    stride=1,
+                )
+            )
+            layers.append(torch.nn.ReLU())
+            layers.append(
+                torch.nn.Conv2d(
+                    in_channels=block_dim,
+                    out_channels=block_dim,
+                    kernel_size=3,
+                    padding=0,
+                    stride=1,
+                )
+            )
+            layers.append(
+                torch.nn.MaxPool2d(kernel_size=2, stride=2, padding=0, ceil_mode=True)
+            )
+            cur_channels = block_dim
+
+        self.layers = nn.Sequential(*layers)
+
+        self.out = nn.Linear(block_dims[-1] * (((idim - 1) // 2 - 1) // 2), odim)
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """Subsample x.
+
+        Args:
+          x:
+            Its shape is (N, T, idim).
+
+        Returns:
+          Return a tensor of shape (N, ((T-1)//2 - 1)//2, odim)
+        """
+        x = x.unsqueeze(1)
+        x = self.layers(x)
+        b, c, t, f = x.size()
+        x = self.out(x.transpose(1, 2).contiguous().view(b, t, c * f))
+        return x

egs/mucs/ASR/conformer_ctc/test_label_smoothing.py

@@ -0,0 +1,52 @@
+#!/usr/bin/env python3
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+from distutils.version import LooseVersion
+
+import torch
+from label_smoothing import LabelSmoothingLoss
+
+torch_ver = LooseVersion(torch.__version__)
+
+
+def test_with_torch_label_smoothing_loss():
+    if torch_ver < LooseVersion("1.10.0"):
+        print(f"Current torch version: {torch_ver}")
+        print("Please use torch >= 1.10 to run this test - skipping")
+        return
+    torch.manual_seed(20211105)
+    x = torch.rand(20, 30, 5000)
+    tgt = torch.randint(low=-1, high=x.size(-1), size=x.shape[:2])
+    for reduction in ["none", "sum", "mean"]:
+        custom_loss_func = LabelSmoothingLoss(
+            ignore_index=-1, label_smoothing=0.1, reduction=reduction
+        )
+        custom_loss = custom_loss_func(x, tgt)
+
+        torch_loss_func = torch.nn.CrossEntropyLoss(
+            ignore_index=-1, reduction=reduction, label_smoothing=0.1
+        )
+        torch_loss = torch_loss_func(x.reshape(-1, x.size(-1)), tgt.reshape(-1))
+        assert torch.allclose(custom_loss, torch_loss)
+
+
+def main():
+    test_with_torch_label_smoothing_loss()
+
+
+if __name__ == "__main__":
+    main()

egs/mucs/ASR/conformer_ctc/test_subsampling.py

@@ -0,0 +1,48 @@
+#!/usr/bin/env python3
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import torch
+from subsampling import Conv2dSubsampling, VggSubsampling
+
+
+def test_conv2d_subsampling():
+    N = 3
+    odim = 2
+
+    for T in range(7, 19):
+        for idim in range(7, 20):
+            model = Conv2dSubsampling(idim=idim, odim=odim)
+            x = torch.empty(N, T, idim)
+            y = model(x)
+            assert y.shape[0] == N
+            assert y.shape[1] == ((T - 1) // 2 - 1) // 2
+            assert y.shape[2] == odim
+
+
+def test_vgg_subsampling():
+    N = 3
+    odim = 2
+
+    for T in range(7, 19):
+        for idim in range(7, 20):
+            model = VggSubsampling(idim=idim, odim=odim)
+            x = torch.empty(N, T, idim)
+            y = model(x)
+            assert y.shape[0] == N
+            assert y.shape[1] == ((T - 1) // 2 - 1) // 2
+            assert y.shape[2] == odim

egs/mucs/ASR/conformer_ctc/test_transformer.py

@@ -0,0 +1,104 @@
+#!/usr/bin/env python3
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+
+import torch
+from torch.nn.utils.rnn import pad_sequence
+from transformer import (
+    Transformer,
+    add_eos,
+    add_sos,
+    decoder_padding_mask,
+    encoder_padding_mask,
+    generate_square_subsequent_mask,
+)
+
+
+def test_encoder_padding_mask():
+    supervisions = {
+        "sequence_idx": torch.tensor([0, 1, 2]),
+        "start_frame": torch.tensor([0, 0, 0]),
+        "num_frames": torch.tensor([18, 7, 13]),
+    }
+
+    max_len = ((18 - 1) // 2 - 1) // 2
+    mask = encoder_padding_mask(max_len, supervisions)
+    expected_mask = torch.tensor(
+        [
+            [False, False, False],  # ((18 - 1)//2 - 1)//2 = 3,
+            [False, True, True],  # ((7 - 1)//2 - 1)//2 = 1,
+            [False, False, True],  # ((13 - 1)//2 - 1)//2 = 2,
+        ]
+    )
+    assert torch.all(torch.eq(mask, expected_mask))
+
+
+def test_transformer():
+    num_features = 40
+    num_classes = 87
+    model = Transformer(num_features=num_features, num_classes=num_classes)
+
+    N = 31
+
+    for T in range(7, 30):
+        x = torch.rand(N, T, num_features)
+        y, _, _ = model(x)
+        assert y.shape == (N, (((T - 1) // 2) - 1) // 2, num_classes)
+
+
+def test_generate_square_subsequent_mask():
+    s = 5
+    mask = generate_square_subsequent_mask(s)
+    inf = float("inf")
+    expected_mask = torch.tensor(
+        [
+            [0.0, -inf, -inf, -inf, -inf],
+            [0.0, 0.0, -inf, -inf, -inf],
+            [0.0, 0.0, 0.0, -inf, -inf],
+            [0.0, 0.0, 0.0, 0.0, -inf],
+            [0.0, 0.0, 0.0, 0.0, 0.0],
+        ]
+    )
+    assert torch.all(torch.eq(mask, expected_mask))
+
+
+def test_decoder_padding_mask():
+    x = [torch.tensor([1, 2]), torch.tensor([3]), torch.tensor([2, 5, 8])]
+    y = pad_sequence(x, batch_first=True, padding_value=-1)
+    mask = decoder_padding_mask(y, ignore_id=-1)
+    expected_mask = torch.tensor(
+        [
+            [False, False, True],
+            [False, True, True],
+            [False, False, False],
+        ]
+    )
+    assert torch.all(torch.eq(mask, expected_mask))
+
+
+def test_add_sos():
+    x = [[1, 2], [3], [2, 5, 8]]
+    y = add_sos(x, sos_id=0)
+    expected_y = [[0, 1, 2], [0, 3], [0, 2, 5, 8]]
+    assert y == expected_y
+
+
+def test_add_eos():
+    x = [[1, 2], [3], [2, 5, 8]]
+    y = add_eos(x, eos_id=0)
+    expected_y = [[1, 2, 0], [3, 0], [2, 5, 8, 0]]
+    assert y == expected_y

egs/mucs/ASR/conformer_ctc/train.py

@@ -0,0 +1,824 @@
+#!/usr/bin/env python3
+# Copyright    2021  Xiaomi Corp.        (authors: Fangjun Kuang,
+#                                                  Wei Kang
+#                                                  Mingshuang Luo)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+"""
+Usage:
+  export CUDA_VISIBLE_DEVICES="0,1,2,3"
+  ./conformer_ctc/train.py \
+     --exp-dir ./conformer_ctc/exp \
+     --world-size 4 \
+     --full-libri 1 \
+     --max-duration 200 \
+     --num-epochs 20
+"""
+
+import argparse
+import logging
+from pathlib import Path
+from shutil import copyfile
+from typing import Optional, Tuple
+
+import k2
+import torch
+import torch.multiprocessing as mp
+import torch.nn as nn
+from asr_datamodule import LibriSpeechAsrDataModule
+from conformer import Conformer
+from lhotse.cut import Cut
+from lhotse.utils import fix_random_seed
+from torch import Tensor
+from torch.nn.parallel import DistributedDataParallel as DDP
+from torch.nn.utils import clip_grad_norm_
+from torch.utils.tensorboard import SummaryWriter
+from transformer import Noam
+
+from icefall.bpe_graph_compiler import BpeCtcTrainingGraphCompiler
+from icefall.checkpoint import load_checkpoint
+from icefall.checkpoint import save_checkpoint as save_checkpoint_impl
+from icefall.dist import cleanup_dist, setup_dist
+from icefall.env import get_env_info
+from icefall.graph_compiler import CtcTrainingGraphCompiler
+from icefall.lexicon import Lexicon
+from icefall.utils import (
+    AttributeDict,
+    MetricsTracker,
+    encode_supervisions,
+    setup_logger,
+    str2bool,
+)
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--world-size",
+        type=int,
+        default=1,
+        help="Number of GPUs for DDP training.",
+    )
+
+    parser.add_argument(
+        "--master-port",
+        type=int,
+        default=12354,
+        help="Master port to use for DDP training.",
+    )
+
+    parser.add_argument(
+        "--tensorboard",
+        type=str2bool,
+        default=True,
+        help="Should various information be logged in tensorboard.",
+    )
+
+    parser.add_argument(
+        "--num-epochs",
+        type=int,
+        default=78,
+        help="Number of epochs to train.",
+    )
+
+    parser.add_argument(
+        "--start-epoch",
+        type=int,
+        default=0,
+        help="""Resume training from from this epoch.
+        If it is positive, it will load checkpoint from
+        conformer_ctc/exp/epoch-{start_epoch-1}.pt
+        """,
+    )
+
+    parser.add_argument(
+        "--exp-dir",
+        type=str,
+        default="conformer_ctc/exp",
+        help="""The experiment dir.
+        It specifies the directory where all training related
+        files, e.g., checkpoints, log, etc, are saved
+        """,
+    )
+
+    parser.add_argument(
+        "--lang-dir",
+        type=str,
+        default="data/lang_bpe_500",
+        help="""The lang dir
+        It contains language related input files such as
+        "lexicon.txt"
+        """,
+    )
+
+    parser.add_argument(
+        "--att-rate",
+        type=float,
+        default=0.8,
+        help="""The attention rate.
+        The total loss is (1 -  att_rate) * ctc_loss + att_rate * att_loss
+        """,
+    )
+
+    parser.add_argument(
+        "--num-decoder-layers",
+        type=int,
+        default=6,
+        help="""Number of decoder layer of transformer decoder.
+        Setting this to 0 will not create the decoder at all (pure CTC model)
+        """,
+    )
+
+    parser.add_argument(
+        "--lr-factor",
+        type=float,
+        default=5.0,
+        help="The lr_factor for Noam optimizer",
+    )
+
+    parser.add_argument(
+        "--seed",
+        type=int,
+        default=42,
+        help="The seed for random generators intended for reproducibility",
+    )
+
+    return parser
+
+
+def get_params() -> AttributeDict:
+    """Return a dict containing training parameters.
+
+    All training related parameters that are not passed from the commandline
+    are saved in the variable `params`.
+
+    Commandline options are merged into `params` after they are parsed, so
+    you can also access them via `params`.
+
+    Explanation of options saved in `params`:
+
+        - best_train_loss: Best training loss so far. It is used to select
+                           the model that has the lowest training loss. It is
+                           updated during the training.
+
+        - best_valid_loss: Best validation loss so far. It is used to select
+                           the model that has the lowest validation loss. It is
+                           updated during the training.
+
+        - best_train_epoch: It is the epoch that has the best training loss.
+
+        - best_valid_epoch: It is the epoch that has the best validation loss.
+
+        - batch_idx_train: Used to writing statistics to tensorboard. It
+                           contains number of batches trained so far across
+                           epochs.
+
+        - log_interval:  Print training loss if batch_idx % log_interval` is 0
+
+        - reset_interval: Reset statistics if batch_idx % reset_interval is 0
+
+        - valid_interval:  Run validation if batch_idx % valid_interval is 0
+
+        - feature_dim: The model input dim. It has to match the one used
+                       in computing features.
+
+        - subsampling_factor:  The subsampling factor for the model.
+
+        - use_feat_batchnorm: Normalization for the input features, can be a
+                              boolean indicating whether to do batch
+                              normalization, or a float which means just scaling
+                              the input features with this float value.
+                              If given a float value, we will remove batchnorm
+                              layer in `ConvolutionModule` as well.
+
+        - attention_dim: Hidden dim for multi-head attention model.
+
+        - head: Number of heads of multi-head attention model.
+
+        - num_decoder_layers: Number of decoder layer of transformer decoder.
+
+        - beam_size: It is used in k2.ctc_loss
+
+        - reduction: It is used in k2.ctc_loss
+
+        - use_double_scores: It is used in k2.ctc_loss
+
+        - weight_decay:  The weight_decay for the optimizer.
+
+        - warm_step: The warm_step for Noam optimizer.
+    """
+    params = AttributeDict(
+        {
+            "best_train_loss": float("inf"),
+            "best_valid_loss": float("inf"),
+            "best_train_epoch": -1,
+            "best_valid_epoch": -1,
+            "batch_idx_train": 0,
+            "log_interval": 50,
+            "reset_interval": 200,
+            "valid_interval": 3000,
+            # parameters for conformer
+            "feature_dim": 80,
+            "subsampling_factor": 4,
+            "use_feat_batchnorm": True,
+            "attention_dim": 512,
+            "nhead": 8,
+            # parameters for loss
+            "beam_size": 10,
+            "reduction": "sum",
+            "use_double_scores": True,
+            # parameters for Noam
+            "weight_decay": 1e-6,
+            "warm_step": 80000,
+            "env_info": get_env_info(),
+        }
+    )
+
+    return params
+
+
+def load_checkpoint_if_available(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: Optional[torch.optim.Optimizer] = None,
+    scheduler: Optional[torch.optim.lr_scheduler._LRScheduler] = None,
+) -> None:
+    """Load checkpoint from file.
+
+    If params.start_epoch is positive, it will load the checkpoint from
+    `params.start_epoch - 1`. Otherwise, this function does nothing.
+
+    Apart from loading state dict for `model`, `optimizer` and `scheduler`,
+    it also updates `best_train_epoch`, `best_train_loss`, `best_valid_epoch`,
+    and `best_valid_loss` in `params`.
+
+    Args:
+      params:
+        The return value of :func:`get_params`.
+      model:
+        The training model.
+      optimizer:
+        The optimizer that we are using.
+      scheduler:
+        The learning rate scheduler we are using.
+    Returns:
+      Return None.
+    """
+    if params.start_epoch <= 0:
+        return
+
+    filename = params.exp_dir / f"epoch-{params.start_epoch-1}.pt"
+    saved_params = load_checkpoint(
+        filename,
+        model=model,
+        optimizer=optimizer,
+        scheduler=scheduler,
+    )
+
+    keys = [
+        "best_train_epoch",
+        "best_valid_epoch",
+        "batch_idx_train",
+        "best_train_loss",
+        "best_valid_loss",
+    ]
+    for k in keys:
+        params[k] = saved_params[k]
+
+    return saved_params
+
+
+def save_checkpoint(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: Optional[torch.optim.Optimizer] = None,
+    scheduler: Optional[torch.optim.lr_scheduler._LRScheduler] = None,
+    rank: int = 0,
+) -> None:
+    """Save model, optimizer, scheduler and training stats to file.
+
+    Args:
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The training model.
+    """
+    if rank != 0:
+        return
+    filename = params.exp_dir / f"epoch-{params.cur_epoch}.pt"
+    save_checkpoint_impl(
+        filename=filename,
+        model=model,
+        params=params,
+        optimizer=optimizer,
+        scheduler=scheduler,
+        rank=rank,
+    )
+
+    if params.best_train_epoch == params.cur_epoch:
+        best_train_filename = params.exp_dir / "best-train-loss.pt"
+        copyfile(src=filename, dst=best_train_filename)
+
+    if params.best_valid_epoch == params.cur_epoch:
+        best_valid_filename = params.exp_dir / "best-valid-loss.pt"
+        copyfile(src=filename, dst=best_valid_filename)
+
+
+def compute_loss(
+    params: AttributeDict,
+    model: nn.Module,
+    batch: dict,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    is_training: bool,
+) -> Tuple[Tensor, MetricsTracker]:
+    """
+    Compute CTC loss given the model and its inputs.
+
+    Args:
+      params:
+        Parameters for training. See :func:`get_params`.
+      model:
+        The model for training. It is an instance of Conformer in our case.
+      batch:
+        A batch of data. See `lhotse.dataset.K2SpeechRecognitionDataset()`
+        for the content in it.
+      graph_compiler:
+        It is used to build a decoding graph from a ctc topo and training
+        transcript. The training transcript is contained in the given `batch`,
+        while the ctc topo is built when this compiler is instantiated.
+      is_training:
+        True for training. False for validation. When it is True, this
+        function enables autograd during computation; when it is False, it
+        disables autograd.
+    """
+    device = graph_compiler.device
+    feature = batch["inputs"]
+    # at entry, feature is (N, T, C)
+    assert feature.ndim == 3
+    feature = feature.to(device)
+
+    supervisions = batch["supervisions"]
+    with torch.set_grad_enabled(is_training):
+        nnet_output, encoder_memory, memory_mask = model(feature, supervisions)
+        # nnet_output is (N, T, C)
+
+    # NOTE: We need `encode_supervisions` to sort sequences with
+    # different duration in decreasing order, required by
+    # `k2.intersect_dense` called in `k2.ctc_loss`
+    supervision_segments, texts = encode_supervisions(
+        supervisions, subsampling_factor=params.subsampling_factor
+    )
+
+    if isinstance(graph_compiler, BpeCtcTrainingGraphCompiler):
+        # Works with a BPE model
+        token_ids = graph_compiler.texts_to_ids(texts)
+        decoding_graph = graph_compiler.compile(token_ids)
+    elif isinstance(graph_compiler, CtcTrainingGraphCompiler):
+        # Works with a phone lexicon
+        decoding_graph = graph_compiler.compile(texts)
+    else:
+        raise ValueError(f"Unsupported type of graph compiler: {type(graph_compiler)}")
+
+    dense_fsa_vec = k2.DenseFsaVec(
+        nnet_output,
+        supervision_segments,
+        allow_truncate=params.subsampling_factor - 1,
+    )
+
+    ctc_loss = k2.ctc_loss(
+        decoding_graph=decoding_graph,
+        dense_fsa_vec=dense_fsa_vec,
+        output_beam=params.beam_size,
+        reduction=params.reduction,
+        use_double_scores=params.use_double_scores,
+    )
+
+    if params.att_rate != 0.0:
+        with torch.set_grad_enabled(is_training):
+            mmodel = model.module if hasattr(model, "module") else model
+            # Note: We need to generate an unsorted version of token_ids
+            # `encode_supervisions()` called above sorts text, but
+            # encoder_memory and memory_mask are not sorted, so we
+            # use an unsorted version `supervisions["text"]` to regenerate
+            # the token_ids
+            #
+            # See https://github.com/k2-fsa/icefall/issues/97
+            # for more details
+            unsorted_token_ids = graph_compiler.texts_to_ids(supervisions["text"])
+            att_loss = mmodel.decoder_forward(
+                encoder_memory,
+                memory_mask,
+                token_ids=unsorted_token_ids,
+                sos_id=graph_compiler.sos_id,
+                eos_id=graph_compiler.eos_id,
+            )
+        loss = (1.0 - params.att_rate) * ctc_loss + params.att_rate * att_loss
+    else:
+        loss = ctc_loss
+        att_loss = torch.tensor([0])
+
+    assert loss.requires_grad == is_training
+
+    info = MetricsTracker()
+    info["frames"] = supervision_segments[:, 2].sum().item()
+    info["ctc_loss"] = ctc_loss.detach().cpu().item()
+    if params.att_rate != 0.0:
+        info["att_loss"] = att_loss.detach().cpu().item()
+
+    info["loss"] = loss.detach().cpu().item()
+
+    # `utt_duration` and `utt_pad_proportion` would be normalized by `utterances`  # noqa
+    info["utterances"] = feature.size(0)
+    # averaged input duration in frames over utterances
+    info["utt_duration"] = supervisions["num_frames"].sum().item()
+    # averaged padding proportion over utterances
+    info["utt_pad_proportion"] = (
+        ((feature.size(1) - supervisions["num_frames"]) / feature.size(1)).sum().item()
+    )
+
+    return loss, info
+
+
+def compute_validation_loss(
+    params: AttributeDict,
+    model: nn.Module,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    valid_dl: torch.utils.data.DataLoader,
+    world_size: int = 1,
+) -> MetricsTracker:
+    """Run the validation process."""
+    model.eval()
+
+    tot_loss = MetricsTracker()
+
+    for batch_idx, batch in enumerate(valid_dl):
+        loss, loss_info = compute_loss(
+            params=params,
+            model=model,
+            batch=batch,
+            graph_compiler=graph_compiler,
+            is_training=False,
+        )
+        assert loss.requires_grad is False
+        tot_loss = tot_loss + loss_info
+
+    if world_size > 1:
+        tot_loss.reduce(loss.device)
+
+    loss_value = tot_loss["loss"] / tot_loss["frames"]
+    if loss_value < params.best_valid_loss:
+        params.best_valid_epoch = params.cur_epoch
+        params.best_valid_loss = loss_value
+
+    return tot_loss
+
+
+def train_one_epoch(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: torch.optim.Optimizer,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    train_dl: torch.utils.data.DataLoader,
+    valid_dl: torch.utils.data.DataLoader,
+    tb_writer: Optional[SummaryWriter] = None,
+    world_size: int = 1,
+) -> None:
+    """Train the model for one epoch.
+
+    The training loss from the mean of all frames is saved in
+    `params.train_loss`. It runs the validation process every
+    `params.valid_interval` batches.
+
+    Args:
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The model for training.
+      optimizer:
+        The optimizer we are using.
+      graph_compiler:
+        It is used to convert transcripts to FSAs.
+      train_dl:
+        Dataloader for the training dataset.
+      valid_dl:
+        Dataloader for the validation dataset.
+      tb_writer:
+        Writer to write log messages to tensorboard.
+      world_size:
+        Number of nodes in DDP training. If it is 1, DDP is disabled.
+    """
+    model.train()
+
+    tot_loss = MetricsTracker()
+
+    for batch_idx, batch in enumerate(train_dl):
+        params.batch_idx_train += 1
+        batch_size = len(batch["supervisions"]["text"])
+
+        loss, loss_info = compute_loss(
+            params=params,
+            model=model,
+            batch=batch,
+            graph_compiler=graph_compiler,
+            is_training=True,
+        )
+        # summary stats
+        tot_loss = (tot_loss * (1 - 1 / params.reset_interval)) + loss_info
+
+        # NOTE: We use reduction==sum and loss is computed over utterances
+        # in the batch and there is no normalization to it so far.
+
+        optimizer.zero_grad()
+        loss.backward()
+        clip_grad_norm_(model.parameters(), 5.0, 2.0)
+        optimizer.step()
+
+        if batch_idx % params.log_interval == 0:
+            logging.info(
+                f"Epoch {params.cur_epoch}, "
+                f"batch {batch_idx}, loss[{loss_info}], "
+                f"tot_loss[{tot_loss}], batch size: {batch_size}"
+            )
+
+        if batch_idx % params.log_interval == 0:
+
+            if tb_writer is not None:
+                loss_info.write_summary(
+                    tb_writer, "train/current_", params.batch_idx_train
+                )
+                tot_loss.write_summary(tb_writer, "train/tot_", params.batch_idx_train)
+
+        if batch_idx > 0 and batch_idx % params.valid_interval == 0:
+            logging.info("Computing validation loss")
+            valid_info = compute_validation_loss(
+                params=params,
+                model=model,
+                graph_compiler=graph_compiler,
+                valid_dl=valid_dl,
+                world_size=world_size,
+            )
+            model.train()
+            logging.info(f"Epoch {params.cur_epoch}, validation: {valid_info}")
+            if tb_writer is not None:
+                valid_info.write_summary(
+                    tb_writer, "train/valid_", params.batch_idx_train
+                )
+
+    loss_value = tot_loss["loss"] / tot_loss["frames"]
+    params.train_loss = loss_value
+    if params.train_loss < params.best_train_loss:
+        params.best_train_epoch = params.cur_epoch
+        params.best_train_loss = params.train_loss
+
+
+def run(rank, world_size, args):
+    """
+    Args:
+      rank:
+        It is a value between 0 and `world_size-1`, which is
+        passed automatically by `mp.spawn()` in :func:`main`.
+        The node with rank 0 is responsible for saving checkpoint.
+      world_size:
+        Number of GPUs for DDP training.
+      args:
+        The return value of get_parser().parse_args()
+    """
+    params = get_params()
+    params.update(vars(args))
+
+    fix_random_seed(params.seed)
+    # world_size = 2
+    # params.master_port = 12355
+    if world_size > 1:
+        setup_dist(rank, world_size, params.master_port)
+
+    setup_logger(f"{params.exp_dir}/log/log-train")
+    logging.info("Training started")
+    logging.info(params)
+
+    if args.tensorboard and rank == 0:
+        tb_writer = SummaryWriter(log_dir=f"{params.exp_dir}/tensorboard")
+    else:
+        tb_writer = None
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", rank)
+
+    if "lang_bpe" in str(params.lang_dir):
+        graph_compiler = BpeCtcTrainingGraphCompiler(
+            params.lang_dir,
+            device=device,
+            sos_token="<sos/eos>",
+            eos_token="<sos/eos>",
+        )
+    elif "lang_phone" in str(params.lang_dir):
+        assert params.att_rate == 0, (
+            "Attention decoder training does not support phone lang dirs "
+            "at this time due to a missing <sos/eos> symbol. Set --att-rate=0 "
+            "for pure CTC training when using a phone-based lang dir."
+        )
+        assert params.num_decoder_layers == 0, (
+            "Attention decoder training does not support phone lang dirs "
+            "at this time due to a missing <sos/eos> symbol. "
+            "Set --num-decoder-layers=0 for pure CTC training when using "
+            "a phone-based lang dir."
+        )
+        graph_compiler = CtcTrainingGraphCompiler(
+            lexicon,
+            device=device,
+        )
+        # Manually add the sos/eos ID with their default values
+        # from the BPE recipe which we're adapting here.
+        graph_compiler.sos_id = 1
+        graph_compiler.eos_id = 1
+    else:
+        raise ValueError(
+            f"Unsupported type of lang dir (we expected it to have "
+            f"'lang_bpe' or 'lang_phone' in its name): {params.lang_dir}"
+        )
+
+    logging.info("About to create model")
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=False,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+
+    checkpoints = load_checkpoint_if_available(params=params, model=model)
+
+    model.to(device)
+    if world_size > 1:
+        model = DDP(model, device_ids=[rank])
+
+    optimizer = Noam(
+        model.parameters(),
+        model_size=params.attention_dim,
+        factor=params.lr_factor,
+        warm_step=params.warm_step,
+        weight_decay=params.weight_decay,
+    )
+
+    if checkpoints:
+        optimizer.load_state_dict(checkpoints["optimizer"])
+
+    librispeech = LibriSpeechAsrDataModule(args)
+    # params.full_libri = False
+    # if params.full_libri:
+    #     train_cuts = librispeech.train_all_shuf_cuts()
+    # else:
+    train_cuts = librispeech.train_clean_mucs_cuts()
+
+    def remove_short_and_long_utt(c: Cut):
+        # Keep only utterances with duration between 1 second and 20 seconds
+        #
+        # Caution: There is a reason to select 20.0 here. Please see
+        # ../local/display_manifest_statistics.py
+        #
+        # You should use ../local/display_manifest_statistics.py to get
+        # an utterance duration distribution for your dataset to select
+        # the threshold
+        return 1.0 <= c.duration <= 20.0
+
+    train_cuts = train_cuts.filter(remove_short_and_long_utt)
+
+    train_dl = librispeech.train_dataloaders(train_cuts)
+
+    valid_cuts = librispeech.dev_mucs_cuts()
+    valid_dl = librispeech.valid_dataloaders(valid_cuts)
+
+    scan_pessimistic_batches_for_oom(
+        model=model,
+        train_dl=train_dl,
+        optimizer=optimizer,
+        graph_compiler=graph_compiler,
+        params=params,
+    )
+
+    for epoch in range(params.start_epoch, params.num_epochs):
+        fix_random_seed(params.seed + epoch)
+        train_dl.sampler.set_epoch(epoch)
+
+        cur_lr = optimizer._rate
+        if tb_writer is not None:
+            tb_writer.add_scalar("train/learning_rate", cur_lr, params.batch_idx_train)
+            tb_writer.add_scalar("train/epoch", epoch, params.batch_idx_train)
+
+        if rank == 0:
+            logging.info("epoch {}, learning rate {}".format(epoch, cur_lr))
+
+        params.cur_epoch = epoch
+
+        train_one_epoch(
+            params=params,
+            model=model,
+            optimizer=optimizer,
+            graph_compiler=graph_compiler,
+            train_dl=train_dl,
+            valid_dl=valid_dl,
+            tb_writer=tb_writer,
+            world_size=world_size,
+        )
+
+        save_checkpoint(
+            params=params,
+            model=model,
+            optimizer=optimizer,
+            rank=rank,
+        )
+
+    logging.info("Done!")
+
+    if world_size > 1:
+        torch.distributed.barrier()
+        cleanup_dist()
+
+
+def scan_pessimistic_batches_for_oom(
+    model: nn.Module,
+    train_dl: torch.utils.data.DataLoader,
+    optimizer: torch.optim.Optimizer,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    params: AttributeDict,
+):
+    from lhotse.dataset import find_pessimistic_batches
+
+    logging.info(
+        "Sanity check -- see if any of the batches in epoch 0 would cause OOM."
+    )
+    batches, crit_values = find_pessimistic_batches(train_dl.sampler)
+    for criterion, cuts in batches.items():
+        batch = train_dl.dataset[cuts]
+        try:
+            optimizer.zero_grad()
+            loss, _ = compute_loss(
+                params=params,
+                model=model,
+                batch=batch,
+                graph_compiler=graph_compiler,
+                is_training=True,
+            )
+            loss.backward()
+            clip_grad_norm_(model.parameters(), 5.0, 2.0)
+            optimizer.step()
+        except RuntimeError as e:
+            if "CUDA out of memory" in str(e):
+                logging.error(
+                    "Your GPU ran out of memory with the current "
+                    "max_duration setting. We recommend decreasing "
+                    "max_duration and trying again.\n"
+                    f"Failing criterion: {criterion} "
+                    f"(={crit_values[criterion]}) ..."
+                )
+            raise
+
+
+def main():
+    parser = get_parser()
+    LibriSpeechAsrDataModule.add_arguments(parser)
+    args = parser.parse_args()
+    args.exp_dir = Path(args.exp_dir)
+    args.lang_dir = Path(args.lang_dir)
+
+    world_size = args.world_size
+    assert world_size >= 1
+    if world_size > 1:
+        mp.spawn(run, args=(world_size, args), nprocs=world_size, join=True)
+    else:
+        run(rank=0, world_size=1, args=args)
+
+
+torch.set_num_threads(1)
+torch.set_num_interop_threads(1)
+
+if __name__ == "__main__":
+    main()
+
+#TypeError: trim_to_supervisions() got an unexpected keyword argument 'ignore_channel'
+
+#AssertionError: Trimmed cut has supervisions with different channels. Either set `ignore_channel=True` to keep original channels or `keep_overlapping=False` to retain only 1 supervision per trimmed cut.

egs/mucs/ASR/conformer_ctc/transformer.py

@@ -0,0 +1,928 @@
+# Copyright    2021 University of Chinese Academy of Sciences (author: Han Zhu)
+#
+# See ../../../../LICENSE for clarification regarding multiple authors
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import math
+from typing import Dict, List, Optional, Tuple, Union
+
+import torch
+import torch.nn as nn
+from label_smoothing import LabelSmoothingLoss
+from subsampling import Conv2dSubsampling, VggSubsampling
+from torch.nn.utils.rnn import pad_sequence
+
+# Note: TorchScript requires Dict/List/etc. to be fully typed.
+Supervisions = Dict[str, torch.Tensor]
+
+
+class Transformer(nn.Module):
+    def __init__(
+        self,
+        num_features: int,
+        num_classes: int,
+        subsampling_factor: int = 4,
+        d_model: int = 256,
+        nhead: int = 4,
+        dim_feedforward: int = 2048,
+        num_encoder_layers: int = 12,
+        num_decoder_layers: int = 6,
+        dropout: float = 0.1,
+        normalize_before: bool = True,
+        vgg_frontend: bool = False,
+        use_feat_batchnorm: Union[float, bool] = 0.1,
+    ) -> None:
+        """
+        Args:
+          num_features:
+            The input dimension of the model.
+          num_classes:
+            The output dimension of the model.
+          subsampling_factor:
+            Number of output frames is num_in_frames // subsampling_factor.
+            Currently, subsampling_factor MUST be 4.
+          d_model:
+            Attention dimension.
+          nhead:
+            Number of heads in multi-head attention.
+            Must satisfy d_model // nhead == 0.
+          dim_feedforward:
+            The output dimension of the feedforward layers in encoder/decoder.
+          num_encoder_layers:
+            Number of encoder layers.
+          num_decoder_layers:
+            Number of decoder layers.
+          dropout:
+            Dropout in encoder/decoder.
+          normalize_before:
+            If True, use pre-layer norm; False to use post-layer norm.
+          vgg_frontend:
+            True to use vgg style frontend for subsampling.
+          use_feat_batchnorm:
+            True to use batchnorm for the input layer.
+            Float value to scale the input layer.
+            False to do nothing.
+        """
+        super().__init__()
+        self.use_feat_batchnorm = use_feat_batchnorm
+        assert isinstance(use_feat_batchnorm, (float, bool))
+        if isinstance(use_feat_batchnorm, bool) and use_feat_batchnorm:
+            self.feat_batchnorm = nn.BatchNorm1d(num_features)
+
+        self.num_features = num_features
+        self.num_classes = num_classes
+        self.subsampling_factor = subsampling_factor
+        if subsampling_factor != 4:
+            raise NotImplementedError("Support only 'subsampling_factor=4'.")
+
+        # self.encoder_embed converts the input of shape (N, T, num_classes)
+        # to the shape (N, T//subsampling_factor, d_model).
+        # That is, it does two things simultaneously:
+        #   (1) subsampling: T -> T//subsampling_factor
+        #   (2) embedding: num_classes -> d_model
+        if vgg_frontend:
+            self.encoder_embed = VggSubsampling(num_features, d_model)
+        else:
+            self.encoder_embed = Conv2dSubsampling(num_features, d_model)
+
+        self.encoder_pos = PositionalEncoding(d_model, dropout)
+
+        encoder_layer = TransformerEncoderLayer(
+            d_model=d_model,
+            nhead=nhead,
+            dim_feedforward=dim_feedforward,
+            dropout=dropout,
+            normalize_before=normalize_before,
+        )
+
+        if normalize_before:
+            encoder_norm = nn.LayerNorm(d_model)
+        else:
+            encoder_norm = None
+
+        self.encoder = nn.TransformerEncoder(
+            encoder_layer=encoder_layer,
+            num_layers=num_encoder_layers,
+            norm=encoder_norm,
+        )
+
+        # TODO(fangjun): remove dropout
+        self.encoder_output_layer = nn.Sequential(
+            nn.Dropout(p=dropout), nn.Linear(d_model, num_classes)
+        )
+
+        if num_decoder_layers > 0:
+            self.decoder_num_class = (
+                self.num_classes
+            )  # bpe model already has sos/eos symbol
+
+            self.decoder_embed = nn.Embedding(
+                num_embeddings=self.decoder_num_class, embedding_dim=d_model
+            )
+            self.decoder_pos = PositionalEncoding(d_model, dropout)
+
+            decoder_layer = TransformerDecoderLayer(
+                d_model=d_model,
+                nhead=nhead,
+                dim_feedforward=dim_feedforward,
+                dropout=dropout,
+                normalize_before=normalize_before,
+            )
+
+            if normalize_before:
+                decoder_norm = nn.LayerNorm(d_model)
+            else:
+                decoder_norm = None
+
+            self.decoder = nn.TransformerDecoder(
+                decoder_layer=decoder_layer,
+                num_layers=num_decoder_layers,
+                norm=decoder_norm,
+            )
+
+            self.decoder_output_layer = torch.nn.Linear(d_model, self.decoder_num_class)
+
+            self.decoder_criterion = LabelSmoothingLoss()
+        else:
+            self.decoder_criterion = None
+
+    def forward(
+        self, x: torch.Tensor, supervision: Optional[Supervisions] = None
+    ) -> Tuple[torch.Tensor, torch.Tensor, Optional[torch.Tensor]]:
+        """
+        Args:
+          x:
+            The input tensor. Its shape is (N, T, C).
+          supervision:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            (CAUTION: It contains length information, i.e., start and number of
+             frames, before subsampling)
+
+        Returns:
+          Return a tuple containing 3 tensors:
+            - CTC output for ctc decoding. Its shape is (N, T, C)
+            - Encoder output with shape (T, N, C). It can be used as key and
+              value for the decoder.
+            - Encoder output padding mask. It can be used as
+              memory_key_padding_mask for the decoder. Its shape is (N, T).
+              It is None if `supervision` is None.
+        """
+        if isinstance(self.use_feat_batchnorm, bool) and self.use_feat_batchnorm:
+            x = x.permute(0, 2, 1)  # (N, T, C) -> (N, C, T)
+            x = self.feat_batchnorm(x)
+            x = x.permute(0, 2, 1)  # (N, C, T) -> (N, T, C)
+        if isinstance(self.use_feat_batchnorm, float):
+            x *= self.use_feat_batchnorm
+        encoder_memory, memory_key_padding_mask = self.run_encoder(x, supervision)
+        x = self.ctc_output(encoder_memory)
+        return x, encoder_memory, memory_key_padding_mask
+
+    def run_encoder(
+        self, x: torch.Tensor, supervisions: Optional[Supervisions] = None
+    ) -> Tuple[torch.Tensor, Optional[torch.Tensor]]:
+        """Run the transformer encoder.
+
+        Args:
+          x:
+            The model input. Its shape is (N, T, C).
+          supervisions:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            CAUTION: It contains length information, i.e., start and number of
+            frames, before subsampling
+            It is read directly from the batch, without any sorting. It is used
+            to compute the encoder padding mask, which is used as memory key
+            padding mask for the decoder.
+        Returns:
+          Return a tuple with two tensors:
+            - The encoder output, with shape (T, N, C)
+            - encoder padding mask, with shape (N, T).
+              The mask is None if `supervisions` is None.
+              It is used as memory key padding mask in the decoder.
+        """
+        x = self.encoder_embed(x)
+        x = self.encoder_pos(x)
+        x = x.permute(1, 0, 2)  # (N, T, C) -> (T, N, C)
+        mask = encoder_padding_mask(x.size(0), supervisions)
+        mask = mask.to(x.device) if mask is not None else None
+        x = self.encoder(x, src_key_padding_mask=mask)  # (T, N, C)
+
+        return x, mask
+
+    def ctc_output(self, x: torch.Tensor) -> torch.Tensor:
+        """
+        Args:
+          x:
+            The output tensor from the transformer encoder.
+            Its shape is (T, N, C)
+
+        Returns:
+          Return a tensor that can be used for CTC decoding.
+          Its shape is (N, T, C)
+        """
+        x = self.encoder_output_layer(x)
+        x = x.permute(1, 0, 2)  # (T, N, C) ->(N, T, C)
+        x = nn.functional.log_softmax(x, dim=-1)  # (N, T, C)
+        return x
+
+    @torch.jit.export
+    def decoder_forward(
+        self,
+        memory: torch.Tensor,
+        memory_key_padding_mask: torch.Tensor,
+        token_ids: List[List[int]],
+        sos_id: int,
+        eos_id: int,
+    ) -> torch.Tensor:
+        """
+        Args:
+          memory:
+            It's the output of the encoder with shape (T, N, C)
+          memory_key_padding_mask:
+            The padding mask from the encoder.
+          token_ids:
+            A list-of-list IDs. Each sublist contains IDs for an utterance.
+            The IDs can be either phone IDs or word piece IDs.
+          sos_id:
+            sos token id
+          eos_id:
+            eos token id
+
+        Returns:
+            A scalar, the **sum** of label smoothing loss over utterances
+            in the batch without any normalization.
+        """
+        ys_in = add_sos(token_ids, sos_id=sos_id)
+        ys_in = [torch.tensor(y) for y in ys_in]
+        ys_in_pad = pad_sequence(ys_in, batch_first=True, padding_value=float(eos_id))
+
+        ys_out = add_eos(token_ids, eos_id=eos_id)
+        ys_out = [torch.tensor(y) for y in ys_out]
+        ys_out_pad = pad_sequence(ys_out, batch_first=True, padding_value=float(-1))
+
+        device = memory.device
+        ys_in_pad = ys_in_pad.to(device)
+        ys_out_pad = ys_out_pad.to(device)
+
+        tgt_mask = generate_square_subsequent_mask(ys_in_pad.shape[-1]).to(device)
+
+        tgt_key_padding_mask = decoder_padding_mask(ys_in_pad, ignore_id=eos_id)
+        # TODO: Use length information to create the decoder padding mask
+        # We set the first column to False since the first column in ys_in_pad
+        # contains sos_id, which is the same as eos_id in our current setting.
+        tgt_key_padding_mask[:, 0] = False
+
+        tgt = self.decoder_embed(ys_in_pad)  # (N, T) -> (N, T, C)
+        tgt = self.decoder_pos(tgt)
+        tgt = tgt.permute(1, 0, 2)  # (N, T, C) -> (T, N, C)
+        pred_pad = self.decoder(
+            tgt=tgt,
+            memory=memory,
+            tgt_mask=tgt_mask,
+            tgt_key_padding_mask=tgt_key_padding_mask,
+            memory_key_padding_mask=memory_key_padding_mask,
+        )  # (T, N, C)
+        pred_pad = pred_pad.permute(1, 0, 2)  # (T, N, C) -> (N, T, C)
+        pred_pad = self.decoder_output_layer(pred_pad)  # (N, T, C)
+
+        decoder_loss = self.decoder_criterion(pred_pad, ys_out_pad)
+
+        return decoder_loss
+
+    @torch.jit.export
+    def decoder_nll(
+        self,
+        memory: torch.Tensor,
+        memory_key_padding_mask: torch.Tensor,
+        token_ids: List[torch.Tensor],
+        sos_id: int,
+        eos_id: int,
+    ) -> torch.Tensor:
+        """
+        Args:
+          memory:
+            It's the output of the encoder with shape (T, N, C)
+          memory_key_padding_mask:
+            The padding mask from the encoder.
+          token_ids:
+            A list-of-list IDs (e.g., word piece IDs).
+            Each sublist represents an utterance.
+          sos_id:
+            The token ID for SOS.
+          eos_id:
+            The token ID for EOS.
+        Returns:
+            A 2-D tensor of shape (len(token_ids), max_token_length)
+            representing the cross entropy loss (i.e., negative log-likelihood).
+        """
+        # The common part between this function and decoder_forward could be
+        # extracted as a separate function.
+        if isinstance(token_ids[0], torch.Tensor):
+            # This branch is executed by torchscript in C++.
+            # See https://github.com/k2-fsa/k2/pull/870
+            # https://github.com/k2-fsa/k2/blob/3c1c18400060415b141ccea0115fd4bf0ad6234e/k2/torch/bin/attention_rescore.cu#L286
+            token_ids = [tolist(t) for t in token_ids]
+
+        ys_in = add_sos(token_ids, sos_id=sos_id)
+        ys_in = [torch.tensor(y) for y in ys_in]
+        ys_in_pad = pad_sequence(ys_in, batch_first=True, padding_value=float(eos_id))
+
+        ys_out = add_eos(token_ids, eos_id=eos_id)
+        ys_out = [torch.tensor(y) for y in ys_out]
+        ys_out_pad = pad_sequence(ys_out, batch_first=True, padding_value=float(-1))
+
+        device = memory.device
+        ys_in_pad = ys_in_pad.to(device, dtype=torch.int64)
+        ys_out_pad = ys_out_pad.to(device, dtype=torch.int64)
+
+        tgt_mask = generate_square_subsequent_mask(ys_in_pad.shape[-1]).to(device)
+
+        tgt_key_padding_mask = decoder_padding_mask(ys_in_pad, ignore_id=eos_id)
+        # TODO: Use length information to create the decoder padding mask
+        # We set the first column to False since the first column in ys_in_pad
+        # contains sos_id, which is the same as eos_id in our current setting.
+        tgt_key_padding_mask[:, 0] = False
+
+        tgt = self.decoder_embed(ys_in_pad)  # (B, T) -> (B, T, F)
+        tgt = self.decoder_pos(tgt)
+        tgt = tgt.permute(1, 0, 2)  # (B, T, F) -> (T, B, F)
+        pred_pad = self.decoder(
+            tgt=tgt,
+            memory=memory,
+            tgt_mask=tgt_mask,
+            tgt_key_padding_mask=tgt_key_padding_mask,
+            memory_key_padding_mask=memory_key_padding_mask,
+        )  # (T, B, F)
+        pred_pad = pred_pad.permute(1, 0, 2)  # (T, B, F) -> (B, T, F)
+        pred_pad = self.decoder_output_layer(pred_pad)  # (B, T, F)
+        # nll: negative log-likelihood
+        nll = torch.nn.functional.cross_entropy(
+            pred_pad.view(-1, self.decoder_num_class),
+            ys_out_pad.view(-1),
+            ignore_index=-1,
+            reduction="none",
+        )
+
+        nll = nll.view(pred_pad.shape[0], -1)
+
+        return nll
+
+
+class TransformerEncoderLayer(nn.Module):
+    """
+    Modified from torch.nn.TransformerEncoderLayer.
+    Add support of normalize_before,
+    i.e., use layer_norm before the first block.
+
+    Args:
+      d_model:
+        the number of expected features in the input (required).
+      nhead:
+        the number of heads in the multiheadattention models (required).
+      dim_feedforward:
+        the dimension of the feedforward network model (default=2048).
+      dropout:
+        the dropout value (default=0.1).
+      activation:
+        the activation function of intermediate layer, relu or
+        gelu (default=relu).
+      normalize_before:
+        whether to use layer_norm before the first block.
+
+    Examples::
+        >>> encoder_layer = TransformerEncoderLayer(d_model=512, nhead=8)
+        >>> src = torch.rand(10, 32, 512)
+        >>> out = encoder_layer(src)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        activation: str = "relu",
+        normalize_before: bool = True,
+    ) -> None:
+        super(TransformerEncoderLayer, self).__init__()
+        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        # Implementation of Feedforward model
+        self.linear1 = nn.Linear(d_model, dim_feedforward)
+        self.dropout = nn.Dropout(dropout)
+        self.linear2 = nn.Linear(dim_feedforward, d_model)
+
+        self.norm1 = nn.LayerNorm(d_model)
+        self.norm2 = nn.LayerNorm(d_model)
+        self.dropout1 = nn.Dropout(dropout)
+        self.dropout2 = nn.Dropout(dropout)
+
+        self.activation = _get_activation_fn(activation)
+
+        self.normalize_before = normalize_before
+
+    def __setstate__(self, state):
+        if "activation" not in state:
+            state["activation"] = nn.functional.relu
+        super(TransformerEncoderLayer, self).__setstate__(state)
+
+    def forward(
+        self,
+        src: torch.Tensor,
+        src_mask: Optional[torch.Tensor] = None,
+        src_key_padding_mask: Optional[torch.Tensor] = None,
+    ) -> torch.Tensor:
+        """
+        Pass the input through the encoder layer.
+
+        Args:
+            src: the sequence to the encoder layer (required).
+            src_mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional)
+
+        Shape:
+            src: (S, N, E).
+            src_mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length,
+            N is the batch size, E is the feature number
+        """
+        residual = src
+        if self.normalize_before:
+            src = self.norm1(src)
+        src2 = self.self_attn(
+            src,
+            src,
+            src,
+            attn_mask=src_mask,
+            key_padding_mask=src_key_padding_mask,
+        )[0]
+        src = residual + self.dropout1(src2)
+        if not self.normalize_before:
+            src = self.norm1(src)
+
+        residual = src
+        if self.normalize_before:
+            src = self.norm2(src)
+        src2 = self.linear2(self.dropout(self.activation(self.linear1(src))))
+        src = residual + self.dropout2(src2)
+        if not self.normalize_before:
+            src = self.norm2(src)
+        return src
+
+
+class TransformerDecoderLayer(nn.Module):
+    """
+    Modified from torch.nn.TransformerDecoderLayer.
+    Add support of normalize_before,
+    i.e., use layer_norm before the first block.
+
+    Args:
+      d_model:
+        the number of expected features in the input (required).
+      nhead:
+        the number of heads in the multiheadattention models (required).
+      dim_feedforward:
+        the dimension of the feedforward network model (default=2048).
+      dropout:
+        the dropout value (default=0.1).
+      activation:
+        the activation function of intermediate layer, relu or
+        gelu (default=relu).
+
+    Examples::
+        >>> decoder_layer = nn.TransformerDecoderLayer(d_model=512, nhead=8)
+        >>> memory = torch.rand(10, 32, 512)
+        >>> tgt = torch.rand(20, 32, 512)
+        >>> out = decoder_layer(tgt, memory)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        activation: str = "relu",
+        normalize_before: bool = True,
+    ) -> None:
+        super(TransformerDecoderLayer, self).__init__()
+        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        self.src_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        # Implementation of Feedforward model
+        self.linear1 = nn.Linear(d_model, dim_feedforward)
+        self.dropout = nn.Dropout(dropout)
+        self.linear2 = nn.Linear(dim_feedforward, d_model)
+
+        self.norm1 = nn.LayerNorm(d_model)
+        self.norm2 = nn.LayerNorm(d_model)
+        self.norm3 = nn.LayerNorm(d_model)
+        self.dropout1 = nn.Dropout(dropout)
+        self.dropout2 = nn.Dropout(dropout)
+        self.dropout3 = nn.Dropout(dropout)
+
+        self.activation = _get_activation_fn(activation)
+
+        self.normalize_before = normalize_before
+
+    def __setstate__(self, state):
+        if "activation" not in state:
+            state["activation"] = nn.functional.relu
+        super(TransformerDecoderLayer, self).__setstate__(state)
+
+    def forward(
+        self,
+        tgt: torch.Tensor,
+        memory: torch.Tensor,
+        tgt_mask: Optional[torch.Tensor] = None,
+        memory_mask: Optional[torch.Tensor] = None,
+        tgt_key_padding_mask: Optional[torch.Tensor] = None,
+        memory_key_padding_mask: Optional[torch.Tensor] = None,
+    ) -> torch.Tensor:
+        """Pass the inputs (and mask) through the decoder layer.
+
+        Args:
+          tgt:
+            the sequence to the decoder layer (required).
+          memory:
+            the sequence from the last layer of the encoder (required).
+          tgt_mask:
+            the mask for the tgt sequence (optional).
+          memory_mask:
+            the mask for the memory sequence (optional).
+          tgt_key_padding_mask:
+            the mask for the tgt keys per batch (optional).
+          memory_key_padding_mask:
+            the mask for the memory keys per batch (optional).
+
+        Shape:
+            tgt: (T, N, E).
+            memory: (S, N, E).
+            tgt_mask: (T, T).
+            memory_mask: (T, S).
+            tgt_key_padding_mask: (N, T).
+            memory_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length,
+            N is the batch size, E is the feature number
+        """
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm1(tgt)
+        tgt2 = self.self_attn(
+            tgt,
+            tgt,
+            tgt,
+            attn_mask=tgt_mask,
+            key_padding_mask=tgt_key_padding_mask,
+        )[0]
+        tgt = residual + self.dropout1(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm1(tgt)
+
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm2(tgt)
+        tgt2 = self.src_attn(
+            tgt,
+            memory,
+            memory,
+            attn_mask=memory_mask,
+            key_padding_mask=memory_key_padding_mask,
+        )[0]
+        tgt = residual + self.dropout2(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm2(tgt)
+
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm3(tgt)
+        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt))))
+        tgt = residual + self.dropout3(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm3(tgt)
+        return tgt
+
+
+def _get_activation_fn(activation: str):
+    if activation == "relu":
+        return nn.functional.relu
+    elif activation == "gelu":
+        return nn.functional.gelu
+
+    raise RuntimeError("activation should be relu/gelu, not {}".format(activation))
+
+
+class PositionalEncoding(nn.Module):
+    """This class implements the positional encoding
+    proposed in the following paper:
+
+    - Attention Is All You Need: https://arxiv.org/pdf/1706.03762.pdf
+
+        PE(pos, 2i) = sin(pos / (10000^(2i/d_modle))
+        PE(pos, 2i+1) = cos(pos / (10000^(2i/d_modle))
+
+    Note::
+
+      1 / (10000^(2i/d_model)) = exp(-log(10000^(2i/d_model)))
+                               = exp(-1* 2i / d_model * log(100000))
+                               = exp(2i * -(log(10000) / d_model))
+    """
+
+    def __init__(self, d_model: int, dropout: float = 0.1) -> None:
+        """
+        Args:
+          d_model:
+            Embedding dimension.
+          dropout:
+            Dropout probability to be applied to the output of this module.
+        """
+        super().__init__()
+        self.d_model = d_model
+        self.xscale = math.sqrt(self.d_model)
+        self.dropout = nn.Dropout(p=dropout)
+        # not doing: self.pe = None because of errors thrown by torchscript
+        self.pe = torch.zeros(1, 0, self.d_model, dtype=torch.float32)
+
+    def extend_pe(self, x: torch.Tensor) -> None:
+        """Extend the time t in the positional encoding if required.
+
+        The shape of `self.pe` is (1, T1, d_model). The shape of the input x
+        is (N, T, d_model). If T > T1, then we change the shape of self.pe
+        to (N, T, d_model). Otherwise, nothing is done.
+
+        Args:
+          x:
+            It is a tensor of shape (N, T, C).
+        Returns:
+          Return None.
+        """
+        if self.pe is not None:
+            if self.pe.size(1) >= x.size(1):
+                self.pe = self.pe.to(dtype=x.dtype, device=x.device)
+                return
+        pe = torch.zeros(x.size(1), self.d_model, dtype=torch.float32)
+        position = torch.arange(0, x.size(1), dtype=torch.float32).unsqueeze(1)
+        div_term = torch.exp(
+            torch.arange(0, self.d_model, 2, dtype=torch.float32)
+            * -(math.log(10000.0) / self.d_model)
+        )
+        pe[:, 0::2] = torch.sin(position * div_term)
+        pe[:, 1::2] = torch.cos(position * div_term)
+        pe = pe.unsqueeze(0)
+        # Now pe is of shape (1, T, d_model), where T is x.size(1)
+        self.pe = pe.to(device=x.device, dtype=x.dtype)
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """
+        Add positional encoding.
+
+        Args:
+          x:
+            Its shape is (N, T, C)
+
+        Returns:
+          Return a tensor of shape (N, T, C)
+        """
+        self.extend_pe(x)
+        x = x * self.xscale + self.pe[:, : x.size(1), :]
+        return self.dropout(x)
+
+
+class Noam(object):
+    """
+    Implements Noam optimizer.
+
+    Proposed in
+    "Attention Is All You Need", https://arxiv.org/pdf/1706.03762.pdf
+
+    Modified from
+    https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/optimizer.py  # noqa
+
+    Args:
+      params:
+        iterable of parameters to optimize or dicts defining parameter groups
+      model_size:
+        attention dimension of the transformer model
+      factor:
+        learning rate factor
+      warm_step:
+        warmup steps
+    """
+
+    def __init__(
+        self,
+        params,
+        model_size: int = 256,
+        factor: float = 10.0,
+        warm_step: int = 25000,
+        weight_decay=0,
+    ) -> None:
+        """Construct an Noam object."""
+        self.optimizer = torch.optim.Adam(
+            params, lr=0, betas=(0.9, 0.98), eps=1e-9, weight_decay=weight_decay
+        )
+        self._step = 0
+        self.warmup = warm_step
+        self.factor = factor
+        self.model_size = model_size
+        self._rate = 0
+
+    @property
+    def param_groups(self):
+        """Return param_groups."""
+        return self.optimizer.param_groups
+
+    def step(self):
+        """Update parameters and rate."""
+        self._step += 1
+        rate = self.rate()
+        for p in self.optimizer.param_groups:
+            p["lr"] = rate
+        self._rate = rate
+        self.optimizer.step()
+
+    def rate(self, step=None):
+        """Implement `lrate` above."""
+        if step is None:
+            step = self._step
+        return (
+            self.factor
+            * self.model_size ** (-0.5)
+            * min(step ** (-0.5), step * self.warmup ** (-1.5))
+        )
+
+    def zero_grad(self):
+        """Reset gradient."""
+        self.optimizer.zero_grad()
+
+    def state_dict(self):
+        """Return state_dict."""
+        return {
+            "_step": self._step,
+            "warmup": self.warmup,
+            "factor": self.factor,
+            "model_size": self.model_size,
+            "_rate": self._rate,
+            "optimizer": self.optimizer.state_dict(),
+        }
+
+    def load_state_dict(self, state_dict):
+        """Load state_dict."""
+        for key, value in state_dict.items():
+            if key == "optimizer":
+                self.optimizer.load_state_dict(state_dict["optimizer"])
+            else:
+                setattr(self, key, value)
+
+
+def encoder_padding_mask(
+    max_len: int, supervisions: Optional[Supervisions] = None
+) -> Optional[torch.Tensor]:
+    """Make mask tensor containing indexes of padded part.
+
+    TODO::
+      This function **assumes** that the model uses
+      a subsampling factor of 4. We should remove that
+      assumption later.
+
+    Args:
+      max_len:
+        Maximum length of input features.
+        CAUTION: It is the length after subsampling.
+      supervisions:
+        Supervision in lhotse format.
+        See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+        (CAUTION: It contains length information, i.e., start and number of
+         frames, before subsampling)
+
+    Returns:
+        Tensor: Mask tensor of dimension (batch_size, input_length),
+        True denote the masked indices.
+    """
+    if supervisions is None:
+        return None
+
+    supervision_segments = torch.stack(
+        (
+            supervisions["sequence_idx"],
+            supervisions["start_frame"],
+            supervisions["num_frames"],
+        ),
+        1,
+    ).to(torch.int32)
+
+    lengths = [0 for _ in range(int(supervision_segments[:, 0].max().item()) + 1)]
+    for idx in range(supervision_segments.size(0)):
+        # Note: TorchScript doesn't allow to unpack tensors as tuples
+        sequence_idx = supervision_segments[idx, 0].item()
+        start_frame = supervision_segments[idx, 1].item()
+        num_frames = supervision_segments[idx, 2].item()
+        lengths[sequence_idx] = start_frame + num_frames
+
+    lengths = [((i - 1) // 2 - 1) // 2 for i in lengths]
+    bs = int(len(lengths))
+    seq_range = torch.arange(0, max_len, dtype=torch.int64)
+    seq_range_expand = seq_range.unsqueeze(0).expand(bs, max_len)
+    # Note: TorchScript doesn't implement Tensor.new()
+    seq_length_expand = torch.tensor(
+        lengths, device=seq_range_expand.device, dtype=seq_range_expand.dtype
+    ).unsqueeze(-1)
+    mask = seq_range_expand >= seq_length_expand
+
+    return mask
+
+
+def decoder_padding_mask(ys_pad: torch.Tensor, ignore_id: int = -1) -> torch.Tensor:
+    """Generate a length mask for input.
+
+    The masked position are filled with True,
+    Unmasked positions are filled with False.
+
+    Args:
+      ys_pad:
+        padded tensor of dimension (batch_size, input_length).
+      ignore_id:
+        the ignored number (the padding number) in ys_pad
+
+    Returns:
+      Tensor:
+        a bool tensor of the same shape as the input tensor.
+    """
+    ys_mask = ys_pad == ignore_id
+    return ys_mask
+
+
+def generate_square_subsequent_mask(sz: int) -> torch.Tensor:
+    """Generate a square mask for the sequence. The masked positions are
+    filled with float('-inf'). Unmasked positions are filled with float(0.0).
+    The mask can be used for masked self-attention.
+
+    For instance, if sz is 3, it returns::
+
+        tensor([[0., -inf, -inf],
+                [0., 0., -inf],
+                [0., 0., 0]])
+
+    Args:
+      sz: mask size
+
+    Returns:
+      A square mask of dimension (sz, sz)
+    """
+    mask = (torch.triu(torch.ones(sz, sz)) == 1).transpose(0, 1)
+    mask = (
+        mask.float()
+        .masked_fill(mask == 0, float("-inf"))
+        .masked_fill(mask == 1, float(0.0))
+    )
+    return mask
+
+
+def add_sos(token_ids: List[List[int]], sos_id: int) -> List[List[int]]:
+    """Prepend sos_id to each utterance.
+
+    Args:
+      token_ids:
+        A list-of-list of token IDs. Each sublist contains
+        token IDs (e.g., word piece IDs) of an utterance.
+      sos_id:
+        The ID of the SOS token.
+
+    Return:
+      Return a new list-of-list, where each sublist starts
+      with SOS ID.
+    """
+    return [[sos_id] + utt for utt in token_ids]
+
+
+def add_eos(token_ids: List[List[int]], eos_id: int) -> List[List[int]]:
+    """Append eos_id to each utterance.
+
+    Args:
+      token_ids:
+        A list-of-list of token IDs. Each sublist contains
+        token IDs (e.g., word piece IDs) of an utterance.
+      eos_id:
+        The ID of the EOS token.
+
+    Return:
+      Return a new list-of-list, where each sublist ends
+      with EOS ID.
+    """
+    return [utt + [eos_id] for utt in token_ids]
+
+
+def tolist(t: torch.Tensor) -> List[int]:
+    """Used by jit"""
+    return torch.jit.annotate(List[int], t.tolist())

egs/mucs/ASR/local/compute_fbank_mucs.py

@@ -81,8 +81,11 @@ def compute_fbank_mucs(
     dataset_parts = (
             "train",
             "test",
+            "dev",
     )
-    
+    # dataset_parts = (
+    #         "test",
+    # )
     prefix = "mucs"
     suffix = "jsonl.gz"
     manifests = read_manifests_if_cached(
@@ -115,13 +118,18 @@ def compute_fbank_mucs(
                 recordings=m["recordings"],
                 supervisions=m["supervisions"],
             )
-
-            if "train" in partition:
-                if bpe_model:
-                    cut_set = filter_cuts(cut_set, sp)
-                cut_set = (
-                    cut_set + cut_set.perturb_speed(0.9) + cut_set.perturb_speed(1.1)
-                )
+            # print(len(m["supervisions"]))
+            # for s in m["supervisions"]:
+            #     # print(s)
+            #     if s.channel != 0:
+            #         print(s)
+            # exit()
+            # if "train" in partition:
+            #     if bpe_model:
+            #         cut_set = filter_cuts(cut_set, sp)
+            #     cut_set = (
+            #         cut_set + cut_set.perturb_speed(0.9) + cut_set.perturb_speed(1.1)
+            #     )
             cut_set = cut_set.compute_and_store_features(
                 extractor=extractor,
                 storage_path=f"{output_dir}/{prefix}_feats_{partition}",
@@ -131,7 +139,8 @@ def compute_fbank_mucs(
                 storage_type=LilcomChunkyWriter,
             )
             cut_set = cut_set.trim_to_supervisions(
-            keep_overlapping=False, min_duration=None
+            keep_overlapping=False, min_duration=None, keep_all_channels=False,
+            
         )
             cut_set.to_file(output_dir / cuts_filename)
 

egs/mucs/ASR/local/prepare_manifest.py

@@ -20,15 +20,6 @@ from lhotse import (
 from lhotse.recipes.utils import manifests_exist, read_manifests_if_cached
 from lhotse.utils import Pathlike, safe_extract, urlretrieve_progress
 
-LIBRITTS = (
-    "dev-clean",
-    "dev-other",
-    "test-clean",
-    "test-other",
-    "train-clean-100",
-    "train-clean-360",
-    "train-other-500",
-)
 
 def prepare_mucs(
     corpus_dir: Pathlike,
@@ -51,7 +42,7 @@ def prepare_mucs(
     corpus_dir = Path(corpus_dir)
     assert corpus_dir.is_dir(), f"No such directory: {corpus_dir}"
 
-    dataset_parts = ["train", "test"]
+    dataset_parts = ["train", "test", "dev"]
 
     manifests = {}
 

egs/mucs/ASR/local/validate_manifest.py

@@ -84,15 +84,16 @@ def main():
     logging.info(f"Validating {manifest}")
 
     assert manifest.is_file(), f"{manifest} does not exist"
-    print(manifest)
+    # print(manifest)
     cut_set = load_manifest_lazy(manifest)
-    print(cut_set)
+    # print(cut_set)
     assert isinstance(cut_set, CutSet)
 
     for c in cut_set:
         # print(len(c.supervisions))
-        # validate_one_supervision_per_cut(c)
-        # validate_supervision_and_cut_time_bounds(c)
+        # print(c.supervisions)
+        validate_one_supervision_per_cut(c)
+        validate_supervision_and_cut_time_bounds(c)
 
     # Validation from K2 training
     # - checks supervision start is 0

egs/mucs/ASR/prepare.sh

@@ -6,8 +6,8 @@ export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
 set -eou pipefail
 
 nj=60
-stage=3
-stop_stage=3
+stage=-1
+stop_stage=9
 
 # We assume dl_dir (download dir) contains the following
 # directories and files. If not, they will be downloaded
@@ -94,7 +94,7 @@ if [ $stage -le 3 ] && [ $stop_stage -ge 3 ]; then
   mkdir -p data/fbank
   if [ ! -e data/fbank/.mucs.done ]; then
     ./local/compute_fbank_mucs.py
-    touch data/fbank/.mucs.done
+    # touch data/fbank/.mucs.done
   fi
 
   # exit
@@ -102,14 +102,15 @@ if [ $stage -le 3 ] && [ $stop_stage -ge 3 ]; then
   if [ ! -e data/fbank/.mucs-validated.done ]; then
     log "Validating data/fbank for mucs"
     parts=(
-      train,
+      train
       test
+      dev
     )
     for part in ${parts[@]}; do
       python3 ./local/validate_manifest.py \
         data/fbank/mucs_cuts_${part}.jsonl.gz
     done
-    touch data/fbank/.mucs-validated.done
+    # touch data/fbank/.mucs-validated.done
   fi
 fi
 
@@ -201,28 +202,35 @@ if [ $stage -le 7 ] && [ $stop_stage -ge 7 ]; then
   for vocab_size in ${vocab_sizes[@]}; do
     lang_dir=data/lang_bpe_${vocab_size}
 
-    if [ ! -f $lang_dir/transcript_tokens.txt ]; then
-      ./local/convert_transcript_words_to_tokens.py \
-        --lexicon $lang_dir/lexicon.txt \
-        --transcript $lang_dir/transcript_words.txt \
-        --oov "<UNK>" \
-        > $lang_dir/transcript_tokens.txt
-    fi
+    # if [ ! -f $lang_dir/transcript_tokens.txt ]; then
+    #   ./local/convert_transcript_words_to_tokens.py \
+    #     --lexicon $lang_dir/lexicon.txt \
+    #     --transcript $lang_dir/transcript_words.txt \
+    #     --oov "<UNK>" \
+    #     > $lang_dir/transcript_tokens.txt
+    # fi
 
-    if [ ! -f $lang_dir/P.arpa ]; then
+    if [ ! -f $lang_dir/lm_3.arpa ]; then
       ./shared/make_kn_lm.py \
-        -ngram-order 2 \
-        -text $lang_dir/transcript_tokens.txt \
-        -lm $lang_dir/P.arpa
+        -ngram-order 3 \
+        -text $lang_dir/transcript_words.txt \
+        -lm $lang_dir/lm_3.arpa
     fi
 
-    if [ ! -f $lang_dir/P.fst.txt ]; then
-      python3 -m kaldilm \
-        --read-symbol-table="$lang_dir/tokens.txt" \
-        --disambig-symbol='#0' \
-        --max-order=2 \
-        $lang_dir/P.arpa > $lang_dir/P.fst.txt
+    if [ ! -f $lang_dir/lm_4.arpa ]; then
+      ./shared/make_kn_lm.py \
+        -ngram-order 4 \
+        -text $lang_dir/transcript_words.txt \
+        -lm $lang_dir/lm_4.arpa
     fi
+
+    # if [ ! -f $lang_dir/P.fst.txt ]; then
+    #   python3 -m kaldilm \
+    #     --read-symbol-table="$lang_dir/tokens.txt" \
+    #     --disambig-symbol='#0' \
+    #     --max-order=2 \
+    #     $lang_dir/P.arpa > $lang_dir/P.fst.txt
+    # fi
   done
 fi
 
@@ -238,22 +246,31 @@ if [ $stage -le 8 ] && [ $stop_stage -ge 8 ]; then
       --read-symbol-table="data/lang_phone/words.txt" \
       --disambig-symbol='#0' \
       --max-order=3 \
-      $dl_dir/lm/3-gram.pruned.1e-7.arpa > data/lm/G_3_gram.fst.txt
+      data/lang_bpe_200/lm_3.arpa > data/lm/G_3_gram.fst.txt
   fi
 
   if [ ! -f data/lm/G_4_gram.fst.txt ]; then
-    # It is used for LM rescoring
+    # It is used in building HLG
     python3 -m kaldilm \
       --read-symbol-table="data/lang_phone/words.txt" \
       --disambig-symbol='#0' \
-      --max-order=4 \
-      $dl_dir/lm/4-gram.arpa > data/lm/G_4_gram.fst.txt
+      --max-order=3 \
+      data/lang_bpe_200/lm_4.arpa > data/lm/G_4_gram.fst.txt
   fi
+
+  # if [ ! -f data/lm/G_4_gram.fst.txt ]; then
+  #   # It is used for LM rescoring
+  #   python3 -m kaldilm \
+  #     --read-symbol-table="data/lang_phone/words.txt" \
+  #     --disambig-symbol='#0' \
+  #     --max-order=4 \
+  #     $dl_dir/lm/4-gram.arpa > data/lm/G_4_gram.fst.txt
+  # fi
 fi
 
 if [ $stage -le 9 ] && [ $stop_stage -ge 9 ]; then
   log "Stage 9: Compile HLG"
-  ./local/compile_hlg.py --lang-dir data/lang_phone
+  # ./local/compile_hlg.py --lang-dir data/lang_phone
 
   # Note If ./local/compile_hlg.py throws OOM,
   # please switch to the following command

egs/mucs/ASR/run.sh

@@ -3,14 +3,15 @@ export CUDA_VISIBLE_DEVICES="0"
 
 ./conformer_ctc/train.py \
     --num-epochs 60 \
-    --max-duration 100 \
-    --exp-dir ./conformer_ctc/exp \
+    --max-duration 300 \
+    --exp-dir ./conformer_ctc/exp_with_devset_split \
     --lang-dir data/lang_bpe_200 \
     --enable-musan False \
 
-# ./conformer_ctc/decode.py \
-#     --epoch 59 \
-#     --avg 10 \
-#     --exp-dir ./conformer_ctc/exp \
-#     --max-duration 100 \
-#     --lang-dir ./data/lang_bpe_2000
+
+./conformer_ctc/decode.py \
+    --epoch 59 \
+    --avg 10 \
+    --exp-dir ./conformer_ctc/exp_with_devset_split \
+    --max-duration 100 \
+    --lang-dir ./data/lang_bpe_200