Add madam optimizer from Dan.

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/conformer.py

@@ -0,0 +1,918 @@
+#!/usr/bin/env python3
+
+# Copyright (c)  2021  University of Chinese Academy of Sciences (author: Han Zhu)
+# Apache 2.0
+
+import math
+import warnings
+from typing import Optional, Tuple
+
+import torch
+from torch import Tensor, nn
+from transformer import Supervisions, Transformer, encoder_padding_mask
+
+
+class Conformer(Transformer):
+    """
+    Args:
+        num_features (int): Number of input features
+        num_classes (int): Number of output classes
+        subsampling_factor (int): subsampling factor of encoder (the convolution layers before transformers)
+        d_model (int): attention dimension
+        nhead (int): number of head
+        dim_feedforward (int): feedforward dimention
+        num_encoder_layers (int): number of encoder layers
+        num_decoder_layers (int): number of decoder layers
+        dropout (float): dropout rate
+        cnn_module_kernel (int): Kernel size of convolution module
+        normalize_before (bool): whether to use layer_norm before the first block.
+        vgg_frontend (bool): whether to use vgg frontend.
+    """
+
+    def __init__(
+        self,
+        num_features: int,
+        num_classes: int,
+        subsampling_factor: int = 4,
+        d_model: int = 256,
+        nhead: int = 4,
+        dim_feedforward: int = 2048,
+        num_encoder_layers: int = 12,
+        num_decoder_layers: int = 6,
+        dropout: float = 0.1,
+        cnn_module_kernel: int = 31,
+        normalize_before: bool = True,
+        vgg_frontend: bool = False,
+        is_espnet_structure: bool = False,
+        mmi_loss: bool = True,
+        use_feat_batchnorm: bool = False,
+    ) -> None:
+        super(Conformer, self).__init__(
+            num_features=num_features,
+            num_classes=num_classes,
+            subsampling_factor=subsampling_factor,
+            d_model=d_model,
+            nhead=nhead,
+            dim_feedforward=dim_feedforward,
+            num_encoder_layers=num_encoder_layers,
+            num_decoder_layers=num_decoder_layers,
+            dropout=dropout,
+            normalize_before=normalize_before,
+            vgg_frontend=vgg_frontend,
+            mmi_loss=mmi_loss,
+            use_feat_batchnorm=use_feat_batchnorm,
+        )
+
+        self.encoder_pos = RelPositionalEncoding(d_model, dropout)
+
+        encoder_layer = ConformerEncoderLayer(
+            d_model,
+            nhead,
+            dim_feedforward,
+            dropout,
+            cnn_module_kernel,
+            normalize_before,
+            is_espnet_structure,
+        )
+        self.encoder = ConformerEncoder(encoder_layer, num_encoder_layers)
+        self.normalize_before = normalize_before
+        self.is_espnet_structure = is_espnet_structure
+        if self.normalize_before and self.is_espnet_structure:
+            self.after_norm = nn.LayerNorm(d_model)
+        else:
+            # Note: TorchScript detects that self.after_norm could be used inside forward()
+            #       and throws an error without this change.
+            self.after_norm = identity
+
+    def run_encoder(
+        self, x: Tensor, supervisions: Optional[Supervisions] = None
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        """
+        Args:
+          x:
+            The model input. Its shape is [N, T, C].
+          supervisions:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            CAUTION: It contains length information, i.e., start and number of
+            frames, before subsampling
+            It is read directly from the batch, without any sorting. It is used
+            to compute encoder padding mask, which is used as memory key padding
+            mask for the decoder.
+
+        Returns:
+            Tensor: Predictor tensor of dimension (input_length, batch_size, d_model).
+            Tensor: Mask tensor of dimension (batch_size, input_length)
+        """
+        x = self.encoder_embed(x)
+        x, pos_emb = self.encoder_pos(x)
+        x = x.permute(1, 0, 2)  # (B, T, F) -> (T, B, F)
+        mask = encoder_padding_mask(x.size(0), supervisions)
+        if mask is not None:
+            mask = mask.to(x.device)
+        x = self.encoder(x, pos_emb, src_key_padding_mask=mask)  # (T, B, F)
+
+        if self.normalize_before and self.is_espnet_structure:
+            x = self.after_norm(x)
+
+        return x, mask
+
+
+class ConformerEncoderLayer(nn.Module):
+    """
+    ConformerEncoderLayer is made up of self-attn, feedforward and convolution networks.
+    See: "Conformer: Convolution-augmented Transformer for Speech Recognition"
+
+    Args:
+        d_model: the number of expected features in the input (required).
+        nhead: the number of heads in the multiheadattention models (required).
+        dim_feedforward: the dimension of the feedforward network model (default=2048).
+        dropout: the dropout value (default=0.1).
+        cnn_module_kernel (int): Kernel size of convolution module.
+        normalize_before: whether to use layer_norm before the first block.
+
+    Examples::
+        >>> encoder_layer = ConformerEncoderLayer(d_model=512, nhead=8)
+        >>> src = torch.rand(10, 32, 512)
+        >>> pos_emb = torch.rand(32, 19, 512)
+        >>> out = encoder_layer(src, pos_emb)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        cnn_module_kernel: int = 31,
+        normalize_before: bool = True,
+        is_espnet_structure: bool = False,
+    ) -> None:
+        super(ConformerEncoderLayer, self).__init__()
+        self.self_attn = RelPositionMultiheadAttention(
+            d_model, nhead, dropout=0.0, is_espnet_structure=is_espnet_structure
+        )
+
+        self.feed_forward = nn.Sequential(
+            nn.Linear(d_model, dim_feedforward),
+            Swish(),
+            nn.Dropout(dropout),
+            nn.Linear(dim_feedforward, d_model),
+        )
+
+        self.feed_forward_macaron = nn.Sequential(
+            nn.Linear(d_model, dim_feedforward),
+            Swish(),
+            nn.Dropout(dropout),
+            nn.Linear(dim_feedforward, d_model),
+        )
+
+        self.conv_module = ConvolutionModule(d_model, cnn_module_kernel)
+
+        self.norm_ff_macaron = nn.LayerNorm(
+            d_model
+        )  # for the macaron style FNN module
+        self.norm_ff = nn.LayerNorm(d_model)  # for the FNN module
+        self.norm_mha = nn.LayerNorm(d_model)  # for the MHA module
+
+        self.ff_scale = 0.5
+
+        self.norm_conv = nn.LayerNorm(d_model)  # for the CNN module
+        self.norm_final = nn.LayerNorm(
+            d_model
+        )  # for the final output of the block
+
+        self.dropout = nn.Dropout(dropout)
+
+        self.normalize_before = normalize_before
+
+    def forward(
+        self,
+        src: Tensor,
+        pos_emb: Tensor,
+        src_mask: Optional[Tensor] = None,
+        src_key_padding_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        """
+        Pass the input through the encoder layer.
+
+        Args:
+            src: the sequence to the encoder layer (required).
+            pos_emb: Positional embedding tensor (required).
+            src_mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional).
+
+        Shape:
+            src: (S, N, E).
+            pos_emb: (N, 2*S-1, E)
+            src_mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, N is the batch size, E is the feature number
+        """
+
+        # macaron style feed forward module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_ff_macaron(src)
+        src = residual + self.ff_scale * self.dropout(
+            self.feed_forward_macaron(src)
+        )
+        if not self.normalize_before:
+            src = self.norm_ff_macaron(src)
+
+        # multi-headed self-attention module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_mha(src)
+        src_att = self.self_attn(
+            src,
+            src,
+            src,
+            pos_emb=pos_emb,
+            attn_mask=src_mask,
+            key_padding_mask=src_key_padding_mask,
+        )[0]
+        src = residual + self.dropout(src_att)
+        if not self.normalize_before:
+            src = self.norm_mha(src)
+
+        # convolution module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_conv(src)
+        src = residual + self.dropout(self.conv_module(src))
+        if not self.normalize_before:
+            src = self.norm_conv(src)
+
+        # feed forward module
+        residual = src
+        if self.normalize_before:
+            src = self.norm_ff(src)
+        src = residual + self.ff_scale * self.dropout(self.feed_forward(src))
+        if not self.normalize_before:
+            src = self.norm_ff(src)
+
+        if self.normalize_before:
+            src = self.norm_final(src)
+
+        return src
+
+
+class ConformerEncoder(nn.TransformerEncoder):
+    r"""ConformerEncoder is a stack of N encoder layers
+
+    Args:
+        encoder_layer: an instance of the ConformerEncoderLayer() class (required).
+        num_layers: the number of sub-encoder-layers in the encoder (required).
+        norm: the layer normalization component (optional).
+
+    Examples::
+        >>> encoder_layer = ConformerEncoderLayer(d_model=512, nhead=8)
+        >>> conformer_encoder = ConformerEncoder(encoder_layer, num_layers=6)
+        >>> src = torch.rand(10, 32, 512)
+        >>> pos_emb = torch.rand(32, 19, 512)
+        >>> out = conformer_encoder(src, pos_emb)
+    """
+
+    def __init__(
+        self, encoder_layer: nn.Module, num_layers: int, norm: nn.Module = None
+    ) -> None:
+        super(ConformerEncoder, self).__init__(
+            encoder_layer=encoder_layer, num_layers=num_layers, norm=norm
+        )
+
+    def forward(
+        self,
+        src: Tensor,
+        pos_emb: Tensor,
+        mask: Optional[Tensor] = None,
+        src_key_padding_mask: Optional[Tensor] = None,
+    ) -> Tensor:
+        r"""Pass the input through the encoder layers in turn.
+
+        Args:
+            src: the sequence to the encoder (required).
+            pos_emb: Positional embedding tensor (required).
+            mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional).
+
+        Shape:
+            src: (S, N, E).
+            pos_emb: (N, 2*S-1, E)
+            mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length, N is the batch size, E is the feature number
+
+        """
+        output = src
+
+        for mod in self.layers:
+            output = mod(
+                output,
+                pos_emb,
+                src_mask=mask,
+                src_key_padding_mask=src_key_padding_mask,
+            )
+
+        if self.norm is not None:
+            output = self.norm(output)
+
+        return output
+
+
+class RelPositionalEncoding(torch.nn.Module):
+    """Relative positional encoding module.
+
+    See : Appendix B in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+    Modified from https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/embedding.py
+
+    Args:
+        d_model: Embedding dimension.
+        dropout_rate: Dropout rate.
+        max_len: Maximum input length.
+
+    """
+
+    def __init__(
+        self, d_model: int, dropout_rate: float, max_len: int = 5000
+    ) -> None:
+        """Construct an PositionalEncoding object."""
+        super(RelPositionalEncoding, self).__init__()
+        self.d_model = d_model
+        self.dropout = torch.nn.Dropout(p=dropout_rate)
+        self.pe = None
+        self.extend_pe(torch.tensor(0.0).expand(1, max_len))
+
+    def extend_pe(self, x: Tensor) -> None:
+        """Reset the positional encodings."""
+        if self.pe is not None:
+            # self.pe contains both positive and negative parts
+            # the length of self.pe is 2 * input_len - 1
+            if self.pe.size(1) >= x.size(1) * 2 - 1:
+                # Note: TorchScript doesn't implement operator== for torch.Device
+                if self.pe.dtype != x.dtype or str(self.pe.device) != str(
+                    x.device
+                ):
+                    self.pe = self.pe.to(dtype=x.dtype, device=x.device)
+                return
+        # Suppose `i` means to the position of query vecotr and `j` means the
+        # position of key vector. We use position relative positions when keys
+        # are to the left (i>j) and negative relative positions otherwise (i<j).
+        pe_positive = torch.zeros(x.size(1), self.d_model)
+        pe_negative = torch.zeros(x.size(1), self.d_model)
+        position = torch.arange(0, x.size(1), dtype=torch.float32).unsqueeze(1)
+        div_term = torch.exp(
+            torch.arange(0, self.d_model, 2, dtype=torch.float32)
+            * -(math.log(10000.0) / self.d_model)
+        )
+        pe_positive[:, 0::2] = torch.sin(position * div_term)
+        pe_positive[:, 1::2] = torch.cos(position * div_term)
+        pe_negative[:, 0::2] = torch.sin(-1 * position * div_term)
+        pe_negative[:, 1::2] = torch.cos(-1 * position * div_term)
+
+        # Reserve the order of positive indices and concat both positive and
+        # negative indices. This is used to support the shifting trick
+        # as in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+        pe_positive = torch.flip(pe_positive, [0]).unsqueeze(0)
+        pe_negative = pe_negative[1:].unsqueeze(0)
+        pe = torch.cat([pe_positive, pe_negative], dim=1)
+        self.pe = pe.to(device=x.device, dtype=x.dtype)
+
+    def forward(self, x: torch.Tensor) -> Tuple[Tensor, Tensor]:
+        """Add positional encoding.
+
+        Args:
+            x (torch.Tensor): Input tensor (batch, time, `*`).
+
+        Returns:
+            torch.Tensor: Encoded tensor (batch, time, `*`).
+            torch.Tensor: Encoded tensor (batch, 2*time-1, `*`).
+
+        """
+        self.extend_pe(x)
+        pos_emb = self.pe[
+            :,
+            self.pe.size(1) // 2
+            - x.size(1)
+            + 1 : self.pe.size(1) // 2
+            + x.size(1),
+        ]
+        return self.dropout(x), self.dropout(pos_emb)
+
+
+class RelPositionMultiheadAttention(nn.Module):
+    r"""Multi-Head Attention layer with relative position encoding
+
+    See reference: "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context"
+
+    Args:
+        embed_dim: total dimension of the model.
+        num_heads: parallel attention heads.
+        dropout: a Dropout layer on attn_output_weights. Default: 0.0.
+
+    Examples::
+
+        >>> rel_pos_multihead_attn = RelPositionMultiheadAttention(embed_dim, num_heads)
+        >>> attn_output, attn_output_weights = multihead_attn(query, key, value, pos_emb)
+    """
+
+    def __init__(
+        self,
+        embed_dim: int,
+        num_heads: int,
+        dropout: float = 0.0,
+        is_espnet_structure: bool = False,
+    ) -> None:
+        super(RelPositionMultiheadAttention, self).__init__()
+        self.embed_dim = embed_dim
+        self.num_heads = num_heads
+        self.dropout = dropout
+        self.head_dim = embed_dim // num_heads
+        assert (
+            self.head_dim * num_heads == self.embed_dim
+        ), "embed_dim must be divisible by num_heads"
+
+        self.in_proj = nn.Linear(embed_dim, 3 * embed_dim, bias=True)
+        self.out_proj = nn.Linear(embed_dim, embed_dim, bias=True)
+
+        # linear transformation for positional encoding.
+        self.linear_pos = nn.Linear(embed_dim, embed_dim, bias=False)
+        # these two learnable bias are used in matrix c and matrix d
+        # as described in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context" Section 3.3
+        self.pos_bias_u = nn.Parameter(torch.Tensor(num_heads, self.head_dim))
+        self.pos_bias_v = nn.Parameter(torch.Tensor(num_heads, self.head_dim))
+
+        self._reset_parameters()
+
+        self.is_espnet_structure = is_espnet_structure
+
+    def _reset_parameters(self) -> None:
+        nn.init.xavier_uniform_(self.in_proj.weight)
+        nn.init.constant_(self.in_proj.bias, 0.0)
+        nn.init.constant_(self.out_proj.bias, 0.0)
+
+        nn.init.xavier_uniform_(self.pos_bias_u)
+        nn.init.xavier_uniform_(self.pos_bias_v)
+
+    def forward(
+        self,
+        query: Tensor,
+        key: Tensor,
+        value: Tensor,
+        pos_emb: Tensor,
+        key_padding_mask: Optional[Tensor] = None,
+        need_weights: bool = True,
+        attn_mask: Optional[Tensor] = None,
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        r"""
+        Args:
+            query, key, value: map a query and a set of key-value pairs to an output.
+            pos_emb: Positional embedding tensor
+            key_padding_mask: if provided, specified padding elements in the key will
+                be ignored by the attention. When given a binary mask and a value is True,
+                the corresponding value on the attention layer will be ignored. When given
+                a byte mask and a value is non-zero, the corresponding value on the attention
+                layer will be ignored
+            need_weights: output attn_output_weights.
+            attn_mask: 2D or 3D mask that prevents attention to certain positions. A 2D mask will be broadcasted for all
+                the batches while a 3D mask allows to specify a different mask for the entries of each batch.
+
+        Shape:
+            - Inputs:
+            - query: :math:`(L, N, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key: :math:`(S, N, E)`, where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - value: :math:`(S, N, E)` where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - pos_emb: :math:`(N, 2*L-1, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key_padding_mask: :math:`(N, S)` where N is the batch size, S is the source sequence length.
+            If a ByteTensor is provided, the non-zero positions will be ignored while the position
+            with the zero positions will be unchanged. If a BoolTensor is provided, the positions with the
+            value of ``True`` will be ignored while the position with the value of ``False`` will be unchanged.
+            - attn_mask: 2D mask :math:`(L, S)` where L is the target sequence length, S is the source sequence length.
+            3D mask :math:`(N*num_heads, L, S)` where N is the batch size, L is the target sequence length,
+            S is the source sequence length. attn_mask ensure that position i is allowed to attend the unmasked
+            positions. If a ByteTensor is provided, the non-zero positions are not allowed to attend
+            while the zero positions will be unchanged. If a BoolTensor is provided, positions with ``True``
+            is not allowed to attend while ``False`` values will be unchanged. If a FloatTensor
+            is provided, it will be added to the attention weight.
+
+            - Outputs:
+            - attn_output: :math:`(L, N, E)` where L is the target sequence length, N is the batch size,
+            E is the embedding dimension.
+            - attn_output_weights: :math:`(N, L, S)` where N is the batch size,
+            L is the target sequence length, S is the source sequence length.
+        """
+        return self.multi_head_attention_forward(
+            query,
+            key,
+            value,
+            pos_emb,
+            self.embed_dim,
+            self.num_heads,
+            self.in_proj.weight,
+            self.in_proj.bias,
+            self.dropout,
+            self.out_proj.weight,
+            self.out_proj.bias,
+            training=self.training,
+            key_padding_mask=key_padding_mask,
+            need_weights=need_weights,
+            attn_mask=attn_mask,
+        )
+
+    def rel_shift(self, x: Tensor) -> Tensor:
+        """Compute relative positional encoding.
+
+        Args:
+            x: Input tensor (batch, head, time1, 2*time1-1).
+                time1 means the length of query vector.
+
+        Returns:
+            Tensor: tensor of shape (batch, head, time1, time2)
+          (note: time2 has the same value as time1, but it is for
+          the key, while time1 is for the query).
+        """
+        (batch_size, num_heads, time1, n) = x.shape
+        assert n == 2 * time1 - 1
+        # Note: TorchScript requires explicit arg for stride()
+        batch_stride = x.stride(0)
+        head_stride = x.stride(1)
+        time1_stride = x.stride(2)
+        n_stride = x.stride(3)
+        return x.as_strided(
+            (batch_size, num_heads, time1, time1),
+            (batch_stride, head_stride, time1_stride - n_stride, n_stride),
+            storage_offset=n_stride * (time1 - 1),
+        )
+
+    def multi_head_attention_forward(
+        self,
+        query: Tensor,
+        key: Tensor,
+        value: Tensor,
+        pos_emb: Tensor,
+        embed_dim_to_check: int,
+        num_heads: int,
+        in_proj_weight: Tensor,
+        in_proj_bias: Tensor,
+        dropout_p: float,
+        out_proj_weight: Tensor,
+        out_proj_bias: Tensor,
+        training: bool = True,
+        key_padding_mask: Optional[Tensor] = None,
+        need_weights: bool = True,
+        attn_mask: Optional[Tensor] = None,
+    ) -> Tuple[Tensor, Optional[Tensor]]:
+        r"""
+        Args:
+            query, key, value: map a query and a set of key-value pairs to an output.
+            pos_emb: Positional embedding tensor
+            embed_dim_to_check: total dimension of the model.
+            num_heads: parallel attention heads.
+            in_proj_weight, in_proj_bias: input projection weight and bias.
+            dropout_p: probability of an element to be zeroed.
+            out_proj_weight, out_proj_bias: the output projection weight and bias.
+            training: apply dropout if is ``True``.
+            key_padding_mask: if provided, specified padding elements in the key will
+                be ignored by the attention. This is an binary mask. When the value is True,
+                the corresponding value on the attention layer will be filled with -inf.
+            need_weights: output attn_output_weights.
+            attn_mask: 2D or 3D mask that prevents attention to certain positions. A 2D mask will be broadcasted for all
+                the batches while a 3D mask allows to specify a different mask for the entries of each batch.
+
+        Shape:
+            Inputs:
+            - query: :math:`(L, N, E)` where L is the target sequence length, N is the batch size, E is
+            the embedding dimension.
+            - key: :math:`(S, N, E)`, where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - value: :math:`(S, N, E)` where S is the source sequence length, N is the batch size, E is
+            the embedding dimension.
+            - pos_emb: :math:`(N, 2*L-1, E)` or :math:`(1, 2*L-1, E)` where L is the target sequence
+            length, N is the batch size, E is the embedding dimension.
+            - key_padding_mask: :math:`(N, S)` where N is the batch size, S is the source sequence length.
+            If a ByteTensor is provided, the non-zero positions will be ignored while the zero positions
+            will be unchanged. If a BoolTensor is provided, the positions with the
+            value of ``True`` will be ignored while the position with the value of ``False`` will be unchanged.
+            - attn_mask: 2D mask :math:`(L, S)` where L is the target sequence length, S is the source sequence length.
+            3D mask :math:`(N*num_heads, L, S)` where N is the batch size, L is the target sequence length,
+            S is the source sequence length. attn_mask ensures that position i is allowed to attend the unmasked
+            positions. If a ByteTensor is provided, the non-zero positions are not allowed to attend
+            while the zero positions will be unchanged. If a BoolTensor is provided, positions with ``True``
+            are not allowed to attend while ``False`` values will be unchanged. If a FloatTensor
+            is provided, it will be added to the attention weight.
+
+            Outputs:
+            - attn_output: :math:`(L, N, E)` where L is the target sequence length, N is the batch size,
+            E is the embedding dimension.
+            - attn_output_weights: :math:`(N, L, S)` where N is the batch size,
+            L is the target sequence length, S is the source sequence length.
+        """
+
+        tgt_len, bsz, embed_dim = query.size()
+        assert embed_dim == embed_dim_to_check
+        assert key.size(0) == value.size(0) and key.size(1) == value.size(1)
+
+        head_dim = embed_dim // num_heads
+        assert (
+            head_dim * num_heads == embed_dim
+        ), "embed_dim must be divisible by num_heads"
+        scaling = float(head_dim) ** -0.5
+
+        if torch.equal(query, key) and torch.equal(key, value):
+            # self-attention
+            q, k, v = nn.functional.linear(
+                query, in_proj_weight, in_proj_bias
+            ).chunk(3, dim=-1)
+
+        elif torch.equal(key, value):
+            # encoder-decoder attention
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = 0
+            _end = embed_dim
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            q = nn.functional.linear(query, _w, _b)
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim
+            _end = None
+            _w = in_proj_weight[_start:, :]
+            if _b is not None:
+                _b = _b[_start:]
+            k, v = nn.functional.linear(key, _w, _b).chunk(2, dim=-1)
+
+        else:
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = 0
+            _end = embed_dim
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            q = nn.functional.linear(query, _w, _b)
+
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim
+            _end = embed_dim * 2
+            _w = in_proj_weight[_start:_end, :]
+            if _b is not None:
+                _b = _b[_start:_end]
+            k = nn.functional.linear(key, _w, _b)
+
+            # This is inline in_proj function with in_proj_weight and in_proj_bias
+            _b = in_proj_bias
+            _start = embed_dim * 2
+            _end = None
+            _w = in_proj_weight[_start:, :]
+            if _b is not None:
+                _b = _b[_start:]
+            v = nn.functional.linear(value, _w, _b)
+
+        if not self.is_espnet_structure:
+            q = q * scaling
+
+        if attn_mask is not None:
+            assert (
+                attn_mask.dtype == torch.float32
+                or attn_mask.dtype == torch.float64
+                or attn_mask.dtype == torch.float16
+                or attn_mask.dtype == torch.uint8
+                or attn_mask.dtype == torch.bool
+            ), "Only float, byte, and bool types are supported for attn_mask, not {}".format(
+                attn_mask.dtype
+            )
+            if attn_mask.dtype == torch.uint8:
+                warnings.warn(
+                    "Byte tensor for attn_mask is deprecated. Use bool tensor instead."
+                )
+                attn_mask = attn_mask.to(torch.bool)
+
+            if attn_mask.dim() == 2:
+                attn_mask = attn_mask.unsqueeze(0)
+                if list(attn_mask.size()) != [1, query.size(0), key.size(0)]:
+                    raise RuntimeError(
+                        "The size of the 2D attn_mask is not correct."
+                    )
+            elif attn_mask.dim() == 3:
+                if list(attn_mask.size()) != [
+                    bsz * num_heads,
+                    query.size(0),
+                    key.size(0),
+                ]:
+                    raise RuntimeError(
+                        "The size of the 3D attn_mask is not correct."
+                    )
+            else:
+                raise RuntimeError(
+                    "attn_mask's dimension {} is not supported".format(
+                        attn_mask.dim()
+                    )
+                )
+            # attn_mask's dim is 3 now.
+
+        # convert ByteTensor key_padding_mask to bool
+        if (
+            key_padding_mask is not None
+            and key_padding_mask.dtype == torch.uint8
+        ):
+            warnings.warn(
+                "Byte tensor for key_padding_mask is deprecated. Use bool tensor instead."
+            )
+            key_padding_mask = key_padding_mask.to(torch.bool)
+
+        q = q.contiguous().view(tgt_len, bsz, num_heads, head_dim)
+        k = k.contiguous().view(-1, bsz, num_heads, head_dim)
+        v = v.contiguous().view(-1, bsz * num_heads, head_dim).transpose(0, 1)
+
+        src_len = k.size(0)
+
+        if key_padding_mask is not None:
+            assert key_padding_mask.size(0) == bsz, "{} == {}".format(
+                key_padding_mask.size(0), bsz
+            )
+            assert key_padding_mask.size(1) == src_len, "{} == {}".format(
+                key_padding_mask.size(1), src_len
+            )
+
+        q = q.transpose(0, 1)  # (batch, time1, head, d_k)
+
+        pos_emb_bsz = pos_emb.size(0)
+        assert pos_emb_bsz in (1, bsz)  # actually it is 1
+        p = self.linear_pos(pos_emb).view(pos_emb_bsz, -1, num_heads, head_dim)
+        p = p.transpose(1, 2)  # (batch, head, 2*time1-1, d_k)
+
+        q_with_bias_u = (q + self.pos_bias_u).transpose(
+            1, 2
+        )  # (batch, head, time1, d_k)
+
+        q_with_bias_v = (q + self.pos_bias_v).transpose(
+            1, 2
+        )  # (batch, head, time1, d_k)
+
+        # compute attention score
+        # first compute matrix a and matrix c
+        # as described in "Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context" Section 3.3
+        k = k.permute(1, 2, 3, 0)  # (batch, head, d_k, time2)
+        matrix_ac = torch.matmul(
+            q_with_bias_u, k
+        )  # (batch, head, time1, time2)
+
+        # compute matrix b and matrix d
+        matrix_bd = torch.matmul(
+            q_with_bias_v, p.transpose(-2, -1)
+        )  # (batch, head, time1, 2*time1-1)
+        matrix_bd = self.rel_shift(matrix_bd)
+
+        if not self.is_espnet_structure:
+            attn_output_weights = (
+                matrix_ac + matrix_bd
+            )  # (batch, head, time1, time2)
+        else:
+            attn_output_weights = (
+                matrix_ac + matrix_bd
+            ) * scaling  # (batch, head, time1, time2)
+
+        attn_output_weights = attn_output_weights.view(
+            bsz * num_heads, tgt_len, -1
+        )
+
+        assert list(attn_output_weights.size()) == [
+            bsz * num_heads,
+            tgt_len,
+            src_len,
+        ]
+
+        if attn_mask is not None:
+            if attn_mask.dtype == torch.bool:
+                attn_output_weights.masked_fill_(attn_mask, float("-inf"))
+            else:
+                attn_output_weights += attn_mask
+
+        if key_padding_mask is not None:
+            attn_output_weights = attn_output_weights.view(
+                bsz, num_heads, tgt_len, src_len
+            )
+            attn_output_weights = attn_output_weights.masked_fill(
+                key_padding_mask.unsqueeze(1).unsqueeze(2),
+                float("-inf"),
+            )
+            attn_output_weights = attn_output_weights.view(
+                bsz * num_heads, tgt_len, src_len
+            )
+
+        attn_output_weights = nn.functional.softmax(attn_output_weights, dim=-1)
+        attn_output_weights = nn.functional.dropout(
+            attn_output_weights, p=dropout_p, training=training
+        )
+
+        attn_output = torch.bmm(attn_output_weights, v)
+        assert list(attn_output.size()) == [bsz * num_heads, tgt_len, head_dim]
+        attn_output = (
+            attn_output.transpose(0, 1)
+            .contiguous()
+            .view(tgt_len, bsz, embed_dim)
+        )
+        attn_output = nn.functional.linear(
+            attn_output, out_proj_weight, out_proj_bias
+        )
+
+        if need_weights:
+            # average attention weights over heads
+            attn_output_weights = attn_output_weights.view(
+                bsz, num_heads, tgt_len, src_len
+            )
+            return attn_output, attn_output_weights.sum(dim=1) / num_heads
+        else:
+            return attn_output, None
+
+
+class ConvolutionModule(nn.Module):
+    """ConvolutionModule in Conformer model.
+    Modified from https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/conformer/convolution.py
+
+    Args:
+        channels (int): The number of channels of conv layers.
+        kernel_size (int): Kernerl size of conv layers.
+        bias (bool): Whether to use bias in conv layers (default=True).
+
+    """
+
+    def __init__(
+        self, channels: int, kernel_size: int, bias: bool = True
+    ) -> None:
+        """Construct an ConvolutionModule object."""
+        super(ConvolutionModule, self).__init__()
+        # kernerl_size should be a odd number for 'SAME' padding
+        assert (kernel_size - 1) % 2 == 0
+
+        self.pointwise_conv1 = nn.Conv1d(
+            channels,
+            2 * channels,
+            kernel_size=1,
+            stride=1,
+            padding=0,
+            bias=bias,
+        )
+        self.depthwise_conv = nn.Conv1d(
+            channels,
+            channels,
+            kernel_size,
+            stride=1,
+            padding=(kernel_size - 1) // 2,
+            groups=channels,
+            bias=bias,
+        )
+        self.norm = nn.BatchNorm1d(channels)
+        self.pointwise_conv2 = nn.Conv1d(
+            channels,
+            channels,
+            kernel_size=1,
+            stride=1,
+            padding=0,
+            bias=bias,
+        )
+        self.activation = Swish()
+
+    def forward(self, x: Tensor) -> Tensor:
+        """Compute convolution module.
+
+        Args:
+            x: Input tensor (#time, batch, channels).
+
+        Returns:
+            Tensor: Output tensor (#time, batch, channels).
+
+        """
+        # exchange the temporal dimension and the feature dimension
+        x = x.permute(1, 2, 0)  # (#batch, channels, time).
+
+        # GLU mechanism
+        x = self.pointwise_conv1(x)  # (batch, 2*channels, time)
+        x = nn.functional.glu(x, dim=1)  # (batch, channels, time)
+
+        # 1D Depthwise Conv
+        x = self.depthwise_conv(x)
+        x = self.activation(self.norm(x))
+
+        x = self.pointwise_conv2(x)  # (batch, channel, time)
+
+        return x.permute(2, 0, 1)
+
+
+class Swish(torch.nn.Module):
+    """Construct an Swish object."""
+
+    def forward(self, x: Tensor) -> Tensor:
+        """Return Swich activation function."""
+        return x * torch.sigmoid(x)
+
+
+def identity(x):
+    return x

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/decode.py

@@ -0,0 +1,508 @@
+#!/usr/bin/env python3
+
+# Copyright 2021 Xiaomi Corporation (Author: Liyong Guo, Fangjun Kuang)
+
+# (still working in progress)
+
+import argparse
+import logging
+from collections import defaultdict
+from pathlib import Path
+from typing import Dict, List, Optional, Tuple
+
+import k2
+import torch
+import torch.nn as nn
+from conformer import Conformer
+
+from icefall.bpe_graph_compiler import BpeCtcTrainingGraphCompiler
+from icefall.checkpoint import average_checkpoints, load_checkpoint
+from icefall.dataset.librispeech import LibriSpeechAsrDataModule
+from icefall.decode import (
+    get_lattice,
+    nbest_decoding,
+    one_best_decoding,
+    rescore_with_attention_decoder,
+    rescore_with_n_best_list,
+    rescore_with_whole_lattice,
+)
+from icefall.lexicon import Lexicon
+from icefall.utils import (
+    AttributeDict,
+    get_texts,
+    setup_logger,
+    store_transcripts,
+    write_error_stats,
+)
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--epoch",
+        type=int,
+        default=9,
+        help="It specifies the checkpoint to use for decoding."
+        "Note: Epoch counts from 0.",
+    )
+    parser.add_argument(
+        "--avg",
+        type=int,
+        default=1,
+        help="Number of checkpoints to average. Automatically select "
+        "consecutive checkpoints before the checkpoint specified by "
+        "'--epoch'. ",
+    )
+    return parser
+
+
+def get_params() -> AttributeDict:
+    params = AttributeDict(
+        {
+            "exp_dir": Path("conformer_ctc_madam_2/exp_960_hours"),
+            "lang_dir": Path("data/lang_bpe"),
+            "lm_dir": Path("data/lm"),
+            "feature_dim": 80,
+            "nhead": 8,
+            "attention_dim": 512,
+            "subsampling_factor": 4,
+            "num_decoder_layers": 6,
+            "vgg_frontend": False,
+            "is_espnet_structure": True,
+            "mmi_loss": False,
+            "use_feat_batchnorm": True,
+            "search_beam": 20,
+            "output_beam": 8,
+            "min_active_states": 30,
+            "max_active_states": 10000,
+            "use_double_scores": True,
+            # Possible values for method:
+            #  - 1best
+            #  - nbest
+            #  - nbest-rescoring
+            #  - whole-lattice-rescoring
+            #  - attention-decoder
+            #  "method": "whole-lattice-rescoring",
+            "method": "attention-decoder",
+            #  "method": "1best",
+            # num_paths is used when method is "nbest", "nbest-rescoring",
+            # and attention-decoder
+            "num_paths": 100,
+        }
+    )
+    return params
+
+
+def decode_one_batch(
+    params: AttributeDict,
+    model: nn.Module,
+    HLG: k2.Fsa,
+    batch: dict,
+    lexicon: Lexicon,
+    sos_id: int,
+    eos_id: int,
+    G: Optional[k2.Fsa] = None,
+) -> Dict[str, List[List[int]]]:
+    """Decode one batch and return the result in a dict. The dict has the
+    following format:
+
+        - key: It indicates the setting used for decoding. For example,
+               if no rescoring is used, the key is the string `no_rescore`.
+               If LM rescoring is used, the key is the string `lm_scale_xxx`,
+               where `xxx` is the value of `lm_scale`. An example key is
+               `lm_scale_0.7`
+        - value: It contains the decoding result. `len(value)` equals to
+                 batch size. `value[i]` is the decoding result for the i-th
+                 utterance in the given batch.
+    Args:
+      params:
+        It's the return value of :func:`get_params`.
+
+        - params.method is "1best", it uses 1best decoding without LM rescoring.
+        - params.method is "nbest", it uses nbest decoding without LM rescoring.
+        - params.method is "nbest-rescoring", it uses nbest LM rescoring.
+        - params.method is "whole-lattice-rescoring", it uses whole lattice LM
+          rescoring.
+
+      model:
+        The neural model.
+      HLG:
+        The decoding graph.
+      batch:
+        It is the return value from iterating
+        `lhotse.dataset.K2SpeechRecognitionDataset`. See its documentation
+        for the format of the `batch`.
+      lexicon:
+        It contains word symbol table.
+      sos_id:
+        The token ID of the SOS.
+      eos_id:
+        The token ID of the EOS.
+      G:
+        An LM. It is not None when params.method is "nbest-rescoring"
+        or "whole-lattice-rescoring". In general, the G in HLG
+        is a 3-gram LM, while this G is a 4-gram LM.
+    Returns:
+      Return the decoding result. See above description for the format of
+      the returned dict.
+    """
+    device = HLG.device
+    feature = batch["inputs"]
+    assert feature.ndim == 3
+    feature = feature.to(device)
+    # at entry, feature is [N, T, C]
+
+    supervisions = batch["supervisions"]
+
+    nnet_output, memory, memory_key_padding_mask = model(feature, supervisions)
+    # nnet_output is [N, T, C]
+
+    supervision_segments = torch.stack(
+        (
+            supervisions["sequence_idx"],
+            supervisions["start_frame"] // params.subsampling_factor,
+            supervisions["num_frames"] // params.subsampling_factor,
+        ),
+        1,
+    ).to(torch.int32)
+
+    lattice = get_lattice(
+        nnet_output=nnet_output,
+        HLG=HLG,
+        supervision_segments=supervision_segments,
+        search_beam=params.search_beam,
+        output_beam=params.output_beam,
+        min_active_states=params.min_active_states,
+        max_active_states=params.max_active_states,
+        subsampling_factor=params.subsampling_factor,
+    )
+
+    if params.method in ["1best", "nbest"]:
+        if params.method == "1best":
+            best_path = one_best_decoding(
+                lattice=lattice, use_double_scores=params.use_double_scores
+            )
+            key = "no_rescore"
+        else:
+            best_path = nbest_decoding(
+                lattice=lattice,
+                num_paths=params.num_paths,
+                use_double_scores=params.use_double_scores,
+            )
+            key = f"no_rescore-{params.num_paths}"
+
+        hyps = get_texts(best_path)
+        hyps = [[lexicon.word_table[i] for i in ids] for ids in hyps]
+        return {key: hyps}
+
+    assert params.method in [
+        "nbest-rescoring",
+        "whole-lattice-rescoring",
+        "attention-decoder",
+    ]
+
+    lm_scale_list = [0.8, 0.9, 1.0, 1.1, 1.2, 1.3]
+    lm_scale_list += [1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0]
+
+    if params.method == "nbest-rescoring":
+        best_path_dict = rescore_with_n_best_list(
+            lattice=lattice,
+            G=G,
+            num_paths=params.num_paths,
+            lm_scale_list=lm_scale_list,
+        )
+    elif params.method == "whole-lattice-rescoring":
+        best_path_dict = rescore_with_whole_lattice(
+            lattice=lattice, G_with_epsilon_loops=G, lm_scale_list=lm_scale_list
+        )
+    elif params.method == "attention-decoder":
+        # lattice uses a 3-gram Lm. We rescore it with a 4-gram LM.
+        rescored_lattice = rescore_with_whole_lattice(
+            lattice=lattice, G_with_epsilon_loops=G, lm_scale_list=None
+        )
+
+        best_path_dict = rescore_with_attention_decoder(
+            lattice=rescored_lattice,
+            num_paths=params.num_paths,
+            model=model,
+            memory=memory,
+            memory_key_padding_mask=memory_key_padding_mask,
+            sos_id=sos_id,
+            eos_id=eos_id,
+        )
+    else:
+        assert False, f"Unsupported decoding method: {params.method}"
+
+    ans = dict()
+    for lm_scale_str, best_path in best_path_dict.items():
+        hyps = get_texts(best_path)
+        hyps = [[lexicon.word_table[i] for i in ids] for ids in hyps]
+        ans[lm_scale_str] = hyps
+    return ans
+
+
+def decode_dataset(
+    dl: torch.utils.data.DataLoader,
+    params: AttributeDict,
+    model: nn.Module,
+    HLG: k2.Fsa,
+    lexicon: Lexicon,
+    sos_id: int,
+    eos_id: int,
+    G: Optional[k2.Fsa] = None,
+) -> Dict[str, List[Tuple[List[int], List[int]]]]:
+    """Decode dataset.
+
+    Args:
+      dl:
+        PyTorch's dataloader containing the dataset to decode.
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The neural model.
+      HLG:
+        The decoding graph.
+      lexicon:
+        It contains word symbol table.
+      sos_id:
+        The token ID for SOS.
+      eos_id:
+        The token ID for EOS.
+      G:
+        An LM. It is not None when params.method is "nbest-rescoring"
+        or "whole-lattice-rescoring". In general, the G in HLG
+        is a 3-gram LM, while this G is a 4-gram LM.
+    Returns:
+      Return a dict, whose key may be "no-rescore" if no LM rescoring
+      is used, or it may be "lm_scale_0.7" if LM rescoring is used.
+      Its value is a list of tuples. Each tuple contains two elements:
+      The first is the reference transcript, and the second is the
+      predicted result.
+    """
+    results = []
+
+    num_cuts = 0
+
+    results = defaultdict(list)
+    for batch_idx, batch in enumerate(dl):
+        texts = batch["supervisions"]["text"]
+
+        hyps_dict = decode_one_batch(
+            params=params,
+            model=model,
+            HLG=HLG,
+            batch=batch,
+            lexicon=lexicon,
+            G=G,
+            sos_id=sos_id,
+            eos_id=eos_id,
+        )
+
+        for lm_scale, hyps in hyps_dict.items():
+            this_batch = []
+            assert len(hyps) == len(texts)
+            for hyp_words, ref_text in zip(hyps, texts):
+                ref_words = ref_text.split()
+                this_batch.append((ref_words, hyp_words))
+
+            results[lm_scale].extend(this_batch)
+
+        num_cuts += len(batch["supervisions"]["text"])
+
+        if batch_idx % 100 == 0:
+            logging.info(
+                f"batch {batch_idx}, cuts processed until now is "
+                f"{num_cuts} "
+            )
+    return results
+
+
+def save_results(
+    params: AttributeDict,
+    test_set_name: str,
+    results_dict: Dict[str, List[Tuple[List[int], List[int]]]],
+):
+    if params.method == "attention-decoder":
+        # Set it to False since there are too many logs.
+        enable_log = False
+    else:
+        enable_log = True
+    test_set_wers = dict()
+    for key, results in results_dict.items():
+        recog_path = params.exp_dir / f"recogs-{test_set_name}-{key}.txt"
+        store_transcripts(filename=recog_path, texts=results)
+        if enable_log:
+            logging.info(f"The transcripts are stored in {recog_path}")
+
+        # The following prints out WERs, per-word error statistics and aligned
+        # ref/hyp pairs.
+        errs_filename = params.exp_dir / f"errs-{test_set_name}-{key}.txt"
+        with open(errs_filename, "w") as f:
+            wer = write_error_stats(
+                f, f"{test_set_name}-{key}", results, enable_log=enable_log
+            )
+            test_set_wers[key] = wer
+
+        if enable_log:
+            logging.info(
+                "Wrote detailed error stats to {}".format(errs_filename)
+            )
+
+    test_set_wers = sorted(test_set_wers.items(), key=lambda x: x[1])
+    errs_info = params.exp_dir / f"wer-summary-{test_set_name}.txt"
+    with open(errs_info, "w") as f:
+        print("settings\tWER", file=f)
+        for key, val in test_set_wers:
+            print("{}\t{}".format(key, val), file=f)
+
+    s = "\nFor {}, WER of different settings are:\n".format(test_set_name)
+    note = "\tbest for {}".format(test_set_name)
+    for key, val in test_set_wers:
+        s += "{}\t{}{}\n".format(key, val, note)
+        note = ""
+    logging.info(s)
+
+
+@torch.no_grad()
+def main():
+    parser = get_parser()
+    LibriSpeechAsrDataModule.add_arguments(parser)
+    args = parser.parse_args()
+
+    params = get_params()
+    params.update(vars(args))
+
+    setup_logger(f"{params.exp_dir}/log-{params.method}/log-decode")
+    logging.info("Decoding started")
+    logging.info(params)
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", 0)
+
+    logging.info(f"device: {device}")
+
+    graph_compiler = BpeCtcTrainingGraphCompiler(
+        params.lang_dir,
+        device=device,
+        sos_token="<sos/eos>",
+        eos_token="<sos/eos>",
+    )
+    sos_id = graph_compiler.sos_id
+    eos_id = graph_compiler.eos_id
+
+    HLG = k2.Fsa.from_dict(torch.load(f"{params.lang_dir}/HLG.pt"))
+    HLG = HLG.to(device)
+    assert HLG.requires_grad is False
+
+    if not hasattr(HLG, "lm_scores"):
+        HLG.lm_scores = HLG.scores.clone()
+
+    if params.method in (
+        "nbest-rescoring",
+        "whole-lattice-rescoring",
+        "attention-decoder",
+    ):
+        if not (params.lm_dir / "G_4_gram.pt").is_file():
+            logging.info("Loading G_4_gram.fst.txt")
+            logging.warning("It may take 8 minutes.")
+            with open(params.lm_dir / "G_4_gram.fst.txt") as f:
+                first_word_disambig_id = lexicon.word_table["#0"]
+
+                G = k2.Fsa.from_openfst(f.read(), acceptor=False)
+                # G.aux_labels is not needed in later computations, so
+                # remove it here.
+                del G.aux_labels
+                # CAUTION: The following line is crucial.
+                # Arcs entering the back-off state have label equal to #0.
+                # We have to change it to 0 here.
+                G.labels[G.labels >= first_word_disambig_id] = 0
+                G = k2.Fsa.from_fsas([G]).to(device)
+                G = k2.arc_sort(G)
+                torch.save(G.as_dict(), params.lm_dir / "G_4_gram.pt")
+        else:
+            logging.info("Loading pre-compiled G_4_gram.pt")
+            d = torch.load(params.lm_dir / "G_4_gram.pt")
+            G = k2.Fsa.from_dict(d).to(device)
+
+        if params.method in ["whole-lattice-rescoring", "attention-decoder"]:
+            # Add epsilon self-loops to G as we will compose
+            # it with the whole lattice later
+            G = k2.add_epsilon_self_loops(G)
+            G = k2.arc_sort(G)
+            G = G.to(device)
+
+        # G.lm_scores is used to replace HLG.lm_scores during
+        # LM rescoring.
+        G.lm_scores = G.scores.clone()
+    else:
+        G = None
+
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=params.vgg_frontend,
+        is_espnet_structure=params.is_espnet_structure,
+        mmi_loss=params.mmi_loss,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+
+    if params.avg == 1:
+        load_checkpoint(f"{params.exp_dir}/epoch-{params.epoch}.pt", model)
+    else:
+        start = params.epoch - params.avg + 1
+        filenames = []
+        for i in range(start, params.epoch + 1):
+            if start >= 0:
+                filenames.append(f"{params.exp_dir}/epoch-{i}.pt")
+        logging.info(f"averaging {filenames}")
+        model.load_state_dict(average_checkpoints(filenames))
+
+    model.to(device)
+    model.eval()
+    num_param = sum([p.numel() for p in model.parameters()])
+    logging.info(f"Number of model parameters: {num_param}")
+
+    librispeech = LibriSpeechAsrDataModule(args)
+    # CAUTION: `test_sets` is for displaying only.
+    # If you want to skip test-clean, you have to skip
+    # it inside the for loop. That is, use
+    #
+    #   if test_set == 'test-clean': continue
+    #
+    test_sets = ["test-clean", "test-other"]
+    for test_set, test_dl in zip(test_sets, librispeech.test_dataloaders()):
+        results_dict = decode_dataset(
+            dl=test_dl,
+            params=params,
+            model=model,
+            HLG=HLG,
+            lexicon=lexicon,
+            G=G,
+            sos_id=sos_id,
+            eos_id=eos_id,
+        )
+
+        save_results(
+            params=params, test_set_name=test_set, results_dict=results_dict
+        )
+
+    logging.info("Done!")
+
+
+torch.set_num_threads(1)
+torch.set_num_interop_threads(1)
+
+if __name__ == "__main__":
+    main()

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/embedding.py

@@ -0,0 +1,258 @@
+# This file is copied & modified from pytorch/torch/nn/modules/sparse.py
+# It modifies nn.Embedding
+import math
+from typing import Optional
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+from torch import Tensor
+from torch.nn import Parameter
+
+
+class Embedding(nn.Module):
+    r"""A simple lookup table that stores embeddings of a fixed dictionary and size.
+
+    This module is often used to store word embeddings and retrieve them using indices.
+    The input to the module is a list of indices, and the output is the corresponding
+    word embeddings.
+
+    Args:
+        num_embeddings (int): size of the dictionary of embeddings
+        embedding_dim (int): the size of each embedding vector
+        padding_idx (int, optional): If specified, the entries at :attr:`padding_idx` do not contribute to the gradient;
+                                     therefore, the embedding vector at :attr:`padding_idx` is not updated during training,
+                                     i.e. it remains as a fixed "pad". For a newly constructed Embedding,
+                                     the embedding vector at :attr:`padding_idx` will default to all zeros,
+                                     but can be updated to another value to be used as the padding vector.
+        max_norm (float, optional): If given, each embedding vector with norm larger than :attr:`max_norm`
+                                    is renormalized to have norm :attr:`max_norm`.
+        norm_type (float, optional): The p of the p-norm to compute for the :attr:`max_norm` option. Default ``2``.
+        scale_grad_by_freq (boolean, optional): If given, this will scale gradients by the inverse of frequency of
+                                                the words in the mini-batch. Default ``False``.
+        sparse (bool, optional): If ``True``, gradient w.r.t. :attr:`weight` matrix will be a sparse tensor.
+                                 See Notes for more details regarding sparse gradients.
+
+    Attributes:
+        weight (Tensor): the learnable weights of the module of shape (num_embeddings, embedding_dim)
+                         initialized from :math:`\mathcal{N}(0, 1)`
+
+    Shape:
+        - Input: :math:`(*)`, IntTensor or LongTensor of arbitrary shape containing the indices to extract
+        - Output: :math:`(*, H)`, where `*` is the input shape and :math:`H=\text{embedding\_dim}`
+
+    .. note::
+        Keep in mind that only a limited number of optimizers support
+        sparse gradients: currently it's :class:`optim.SGD` (`CUDA` and `CPU`),
+        :class:`optim.SparseAdam` (`CUDA` and `CPU`) and :class:`optim.Adagrad` (`CPU`)
+
+    .. note::
+        When :attr:`max_norm` is not ``None``, :class:`Embedding`'s forward method will modify the
+        :attr:`weight` tensor in-place. Since tensors needed for gradient computations cannot be
+        modified in-place, performing a differentiable operation on ``Embedding.weight`` before
+        calling :class:`Embedding`'s forward method requires cloning ``Embedding.weight`` when
+        :attr:`max_norm` is not ``None``. For example::
+
+            n, d, m = 3, 5, 7
+            embedding = nn.Embedding(n, d, max_norm=True)
+            W = torch.randn((m, d), requires_grad=True)
+            idx = torch.tensor([1, 2])
+            a = embedding.weight.clone() @ W.t()  # weight must be cloned for this to be differentiable
+            b = embedding(idx) @ W.t()  # modifies weight in-place
+            out = (a.unsqueeze(0) + b.unsqueeze(1))
+            loss = out.sigmoid().prod()
+            loss.backward()
+
+    Examples::
+
+        >>> # an Embedding module containing 10 tensors of size 3
+        >>> embedding = nn.Embedding(10, 3)
+        >>> # a batch of 2 samples of 4 indices each
+        >>> input = torch.LongTensor([[1,2,4,5],[4,3,2,9]])
+        >>> embedding(input)
+        tensor([[[-0.0251, -1.6902,  0.7172],
+                 [-0.6431,  0.0748,  0.6969],
+                 [ 1.4970,  1.3448, -0.9685],
+                 [-0.3677, -2.7265, -0.1685]],
+
+                [[ 1.4970,  1.3448, -0.9685],
+                 [ 0.4362, -0.4004,  0.9400],
+                 [-0.6431,  0.0748,  0.6969],
+                 [ 0.9124, -2.3616,  1.1151]]])
+
+
+        >>> # example with padding_idx
+        >>> embedding = nn.Embedding(10, 3, padding_idx=0)
+        >>> input = torch.LongTensor([[0,2,0,5]])
+        >>> embedding(input)
+        tensor([[[ 0.0000,  0.0000,  0.0000],
+                 [ 0.1535, -2.0309,  0.9315],
+                 [ 0.0000,  0.0000,  0.0000],
+                 [-0.1655,  0.9897,  0.0635]]])
+
+        >>> # example of changing `pad` vector
+        >>> padding_idx = 0
+        >>> embedding = nn.Embedding(3, 3, padding_idx=padding_idx)
+        >>> embedding.weight
+        Parameter containing:
+        tensor([[ 0.0000,  0.0000,  0.0000],
+                [-0.7895, -0.7089, -0.0364],
+                [ 0.6778,  0.5803,  0.2678]], requires_grad=True)
+        >>> with torch.no_grad():
+        ...     embedding.weight[padding_idx] = torch.ones(3)
+        >>> embedding.weight
+        Parameter containing:
+        tensor([[ 1.0000,  1.0000,  1.0000],
+                [-0.7895, -0.7089, -0.0364],
+                [ 0.6778,  0.5803,  0.2678]], requires_grad=True)
+    """
+    __constants__ = [
+        "num_embeddings",
+        "embedding_dim",
+        "padding_idx",
+        "max_norm",
+        "norm_type",
+        "scale_grad_by_freq",
+        "sparse",
+    ]
+
+    num_embeddings: int
+    embedding_dim: int
+    padding_idx: Optional[int]
+    max_norm: Optional[float]
+    norm_type: float
+    scale_grad_by_freq: bool
+    weight: Tensor
+    sparse: bool
+
+    def __init__(
+        self,
+        num_embeddings: int,
+        embedding_dim: int,
+        padding_idx: Optional[int] = None,
+        max_norm: Optional[float] = None,
+        norm_type: float = 2.0,
+        scale_grad_by_freq: bool = False,
+        sparse: bool = False,
+        _weight: Optional[Tensor] = None,
+    ) -> None:
+        super(Embedding, self).__init__()
+        self.num_embeddings = num_embeddings
+        self.embedding_dim = embedding_dim
+        if padding_idx is not None:
+            if padding_idx > 0:
+                assert (
+                    padding_idx < self.num_embeddings
+                ), "Padding_idx must be within num_embeddings"
+            elif padding_idx < 0:
+                assert (
+                    padding_idx >= -self.num_embeddings
+                ), "Padding_idx must be within num_embeddings"
+                padding_idx = self.num_embeddings + padding_idx
+        self.padding_idx = padding_idx
+        self.max_norm = max_norm
+        self.norm_type = norm_type
+        self.scale_grad_by_freq = scale_grad_by_freq
+        self.embedding_scale = math.sqrt(self.embedding_dim)
+        if _weight is None:
+            self.weight = Parameter(torch.empty(num_embeddings, embedding_dim))
+            self.reset_parameters()
+        else:
+            assert list(_weight.shape) == [
+                num_embeddings,
+                embedding_dim,
+            ], "Shape of weight does not match num_embeddings and embedding_dim"
+            self.weight = Parameter(_weight)
+
+        self.sparse = sparse
+
+    def reset_parameters(self) -> None:
+        std = 1 / self.embedding_scale
+        nn.init.normal_(self.weight, std=std)
+        self._fill_padding_idx_with_zero()
+
+    def _fill_padding_idx_with_zero(self) -> None:
+        if self.padding_idx is not None:
+            with torch.no_grad():
+                self.weight[self.padding_idx].fill_(0)
+
+    def forward(self, input: Tensor) -> Tensor:
+        return (
+            F.embedding(
+                input,
+                self.weight,
+                self.padding_idx,
+                self.max_norm,
+                self.norm_type,
+                self.scale_grad_by_freq,
+                self.sparse,
+            )
+            * self.embedding_scale
+        )
+
+    def extra_repr(self) -> str:
+        s = "{num_embeddings}, {embedding_dim}"
+        if self.padding_idx is not None:
+            s += ", padding_idx={padding_idx}"
+        if self.max_norm is not None:
+            s += ", max_norm={max_norm}"
+        if self.norm_type != 2:
+            s += ", norm_type={norm_type}"
+        if self.scale_grad_by_freq is not False:
+            s += ", scale_grad_by_freq={scale_grad_by_freq}"
+        if self.sparse is not False:
+            s += ", sparse=True"
+        return s.format(**self.__dict__)
+
+    @classmethod
+    def from_pretrained(
+        cls,
+        embeddings,
+        freeze=True,
+        padding_idx=None,
+        max_norm=None,
+        norm_type=2.0,
+        scale_grad_by_freq=False,
+        sparse=False,
+    ):
+        r"""Creates Embedding instance from given 2-dimensional FloatTensor.
+
+        Args:
+            embeddings (Tensor): FloatTensor containing weights for the Embedding.
+                First dimension is being passed to Embedding as ``num_embeddings``, second as ``embedding_dim``.
+            freeze (boolean, optional): If ``True``, the tensor does not get updated in the learning process.
+                Equivalent to ``embedding.weight.requires_grad = False``. Default: ``True``
+            padding_idx (int, optional): If specified, the entries at :attr:`padding_idx` do not contribute to the gradient;
+                                         therefore, the embedding vector at :attr:`padding_idx` is not updated during training,
+                                         i.e. it remains as a fixed "pad".
+            max_norm (float, optional): See module initialization documentation.
+            norm_type (float, optional): See module initialization documentation. Default ``2``.
+            scale_grad_by_freq (boolean, optional): See module initialization documentation. Default ``False``.
+            sparse (bool, optional): See module initialization documentation.
+
+        Examples::
+
+            >>> # FloatTensor containing pretrained weights
+            >>> weight = torch.FloatTensor([[1, 2.3, 3], [4, 5.1, 6.3]])
+            >>> embedding = nn.Embedding.from_pretrained(weight)
+            >>> # Get embeddings for index 1
+            >>> input = torch.LongTensor([1])
+            >>> embedding(input)
+            tensor([[ 4.0000,  5.1000,  6.3000]])
+        """
+        assert (
+            embeddings.dim() == 2
+        ), "Embeddings parameter is expected to be 2-dimensional"
+        rows, cols = embeddings.shape
+        embedding = cls(
+            num_embeddings=rows,
+            embedding_dim=cols,
+            _weight=embeddings,
+            padding_idx=padding_idx,
+            max_norm=max_norm,
+            norm_type=norm_type,
+            scale_grad_by_freq=scale_grad_by_freq,
+            sparse=sparse,
+        )
+        embedding.weight.requires_grad = not freeze
+        return embedding

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/subsampling.py

@@ -0,0 +1,144 @@
+import torch
+import torch.nn as nn
+
+
+class Conv2dSubsampling(nn.Module):
+    """Convolutional 2D subsampling (to 1/4 length).
+
+    Convert an input of shape [N, T, idim] to an output
+    with shape [N, T', odim], where
+    T' = ((T-1)//2 - 1)//2, which approximates T' == T//4
+
+    It is based on
+    https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/subsampling.py  # noqa
+    """
+
+    def __init__(self, idim: int, odim: int) -> None:
+        """
+        Args:
+          idim:
+            Input dim. The input shape is [N, T, idim].
+            Caution: It requires: T >=7, idim >=7
+          odim:
+            Output dim. The output shape is [N, ((T-1)//2 - 1)//2, odim]
+        """
+        assert idim >= 7
+        super().__init__()
+        self.conv = nn.Sequential(
+            nn.Conv2d(
+                in_channels=1, out_channels=odim, kernel_size=3, stride=2
+            ),
+            nn.ReLU(),
+            nn.Conv2d(
+                in_channels=odim, out_channels=odim, kernel_size=3, stride=2
+            ),
+            nn.ReLU(),
+        )
+        self.out = nn.Linear(odim * (((idim - 1) // 2 - 1) // 2), odim)
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """Subsample x.
+
+        Args:
+          x:
+            Its shape is [N, T, idim].
+
+        Returns:
+          Return a tensor of shape [N, ((T-1)//2 - 1)//2, odim]
+        """
+        # On entry, x is [N, T, idim]
+        x = x.unsqueeze(1)  # [N, T, idim] -> [N, 1, T, idim] i.e., [N, C, H, W]
+        x = self.conv(x)
+        # Now x is of shape [N, odim, ((T-1)//2 - 1)//2, ((idim-1)//2 - 1)//2]
+        b, c, t, f = x.size()
+        x = self.out(x.transpose(1, 2).contiguous().view(b, t, c * f))
+        # Now x is of shape [N, ((T-1)//2 - 1))//2, odim]
+        return x
+
+
+class VggSubsampling(nn.Module):
+    """Trying to follow the setup described in the following paper:
+    https://arxiv.org/pdf/1910.09799.pdf
+
+    This paper is not 100% explicit so I am guessing to some extent,
+    and trying to compare with other VGG implementations.
+
+    Convert an input of shape [N, T, idim] to an output
+    with shape [N, T', odim], where
+    T' = ((T-1)//2 - 1)//2, which approximates T' = T//4
+    """
+
+    def __init__(self, idim: int, odim: int) -> None:
+        """Construct a VggSubsampling object.
+
+        This uses 2 VGG blocks with 2 Conv2d layers each,
+        subsampling its input by a factor of 4 in the time dimensions.
+
+        Args:
+          idim:
+            Input dim. The input shape is [N, T, idim].
+            Caution: It requires: T >=7, idim >=7
+          odim:
+            Output dim. The output shape is [N, ((T-1)//2 - 1)//2, odim]
+        """
+        super().__init__()
+
+        cur_channels = 1
+        layers = []
+        block_dims = [32, 64]
+
+        # The decision to use padding=1 for the 1st convolution, then padding=0
+        # for the 2nd and for the max-pooling, and ceil_mode=True, was driven by
+        # a back-compatibility concern so that the number of frames at the
+        # output would be equal to:
+        #  (((T-1)//2)-1)//2.
+        # We can consider changing this by using padding=1 on the
+        # 2nd convolution, so the num-frames at the output would be T//4.
+        for block_dim in block_dims:
+            layers.append(
+                torch.nn.Conv2d(
+                    in_channels=cur_channels,
+                    out_channels=block_dim,
+                    kernel_size=3,
+                    padding=1,
+                    stride=1,
+                )
+            )
+            layers.append(torch.nn.ReLU())
+            layers.append(
+                torch.nn.Conv2d(
+                    in_channels=block_dim,
+                    out_channels=block_dim,
+                    kernel_size=3,
+                    padding=0,
+                    stride=1,
+                )
+            )
+            layers.append(
+                torch.nn.MaxPool2d(
+                    kernel_size=2, stride=2, padding=0, ceil_mode=True
+                )
+            )
+            cur_channels = block_dim
+
+        self.layers = nn.Sequential(*layers)
+
+        self.out = nn.Linear(
+            block_dims[-1] * (((idim - 1) // 2 - 1) // 2), odim
+        )
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """Subsample x.
+
+        Args:
+          x:
+            Its shape is [N, T, idim].
+
+        Returns:
+          Return a tensor of shape [N, ((T-1)//2 - 1)//2, odim]
+        """
+        x = x.unsqueeze(1)
+        x = self.layers(x)
+        b, c, t, f = x.size()
+        x = self.out(x.transpose(1, 2).contiguous().view(b, t, c * f))
+        return x

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/train.py

@@ -0,0 +1,767 @@
+#!/usr/bin/env python3
+
+# This is just at the very beginning ...
+
+import argparse
+import logging
+from pathlib import Path
+from shutil import copyfile
+from typing import Optional
+
+import k2
+import torch
+import torch.distributed as dist
+import torch.multiprocessing as mp
+import torch.nn as nn
+from conformer import Conformer
+from lhotse.utils import fix_random_seed
+
+#  from transformer import Noam
+from madam import Moam
+from torch.nn.parallel import DistributedDataParallel as DDP
+from torch.nn.utils import clip_grad_norm_
+from torch.utils.tensorboard import SummaryWriter
+
+from icefall.bpe_graph_compiler import BpeCtcTrainingGraphCompiler
+from icefall.checkpoint import load_checkpoint
+from icefall.checkpoint import save_checkpoint as save_checkpoint_impl
+from icefall.dataset.librispeech import LibriSpeechAsrDataModule
+from icefall.dist import cleanup_dist, setup_dist
+from icefall.lexicon import Lexicon
+from icefall.utils import (
+    AttributeDict,
+    encode_supervisions,
+    setup_logger,
+    str2bool,
+)
+
+
+def get_parser():
+    parser = argparse.ArgumentParser(
+        formatter_class=argparse.ArgumentDefaultsHelpFormatter
+    )
+
+    parser.add_argument(
+        "--world-size",
+        type=int,
+        default=1,
+        help="Number of GPUs for DDP training.",
+    )
+
+    parser.add_argument(
+        "--master-port",
+        type=int,
+        default=12354,
+        help="Master port to use for DDP training.",
+    )
+
+    parser.add_argument(
+        "--tensorboard",
+        type=str2bool,
+        default=True,
+        help="Should various information be logged in tensorboard.",
+    )
+
+    # TODO: add extra arguments and support DDP training.
+    # Currently, only single GPU training is implemented. Will add
+    # DDP training once single GPU training is finished.
+    return parser
+
+
+def get_params() -> AttributeDict:
+    """Return a dict containing training parameters.
+
+    All training related parameters that are not passed from the commandline
+    is saved in the variable `params`.
+
+    Commandline options are merged into `params` after they are parsed, so
+    you can also access them via `params`.
+
+    Explanation of options saved in `params`:
+
+        - exp_dir: It specifies the directory where all training related
+                   files, e.g., checkpoints, log, etc, are saved
+
+        - lang_dir: It contains language related input files such as
+                    "lexicon.txt"
+
+        - lr: It specifies the initial learning rate
+
+        - feature_dim: The model input dim. It has to match the one used
+                       in computing features.
+
+        - subsampling_factor:  The subsampling factor for the model.
+
+        - start_epoch:  If it is not zero, load checkpoint `start_epoch-1`
+                        and continue training from that checkpoint.
+
+        - num_epochs:  Number of epochs to train.
+
+        - best_train_loss: Best training loss so far. It is used to select
+                           the model that has the lowest training loss. It is
+                           updated during the training.
+
+        - best_valid_loss: Best validation loss so far. It is used to select
+                           the model that has the lowest validation loss. It is
+                           updated during the training.
+
+        - best_train_epoch: It is the epoch that has the best training loss.
+
+        - best_valid_epoch: It is the epoch that has the best validation loss.
+
+        - batch_idx_train: Used to writing statistics to tensorboard. It
+                           contains number of batches trained so far across
+                           epochs.
+
+        - log_interval:  Print training loss if batch_idx % log_interval` is 0
+
+        - valid_interval:  Run validation if batch_idx % valid_interval is 0
+
+        - reset_interval: Reset statistics if batch_idx % reset_interval is 0
+
+        - beam_size: It is used in k2.ctc_loss
+
+        - reduction: It is used in k2.ctc_loss
+
+        - use_double_scores: It is used in k2.ctc_loss
+    """
+    params = AttributeDict(
+        {
+            "exp_dir": Path("conformer_ctc_madam_no_warmup/exp"),
+            "lang_dir": Path("data/lang_bpe"),
+            "feature_dim": 80,
+            "subsampling_factor": 4,
+            "start_epoch": 0,
+            "num_epochs": 20,
+            "best_train_loss": float("inf"),
+            "best_valid_loss": float("inf"),
+            "best_train_epoch": -1,
+            "best_valid_epoch": -1,
+            "batch_idx_train": 0,
+            "log_interval": 10,
+            "reset_interval": 200,
+            "valid_interval": 3000,
+            "beam_size": 10,
+            "reduction": "sum",
+            "use_double_scores": True,
+            #
+            "accum_grad": 1,
+            "att_rate": 0.7,
+            "attention_dim": 512,
+            "nhead": 8,
+            "num_decoder_layers": 6,
+            "is_espnet_structure": True,
+            "mmi_loss": False,
+            "use_feat_batchnorm": True,
+            "lr_factor": 2.0,
+            "warm_step": 30000,
+        }
+    )
+
+    return params
+
+
+def load_checkpoint_if_available(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: Optional[torch.optim.Optimizer] = None,
+    scheduler: Optional[torch.optim.lr_scheduler._LRScheduler] = None,
+) -> None:
+    """Load checkpoint from file.
+
+    If params.start_epoch is positive, it will load the checkpoint from
+    `params.start_epoch - 1`. Otherwise, this function does nothing.
+
+    Apart from loading state dict for `model`, `optimizer` and `scheduler`,
+    it also updates `best_train_epoch`, `best_train_loss`, `best_valid_epoch`,
+    and `best_valid_loss` in `params`.
+
+    Args:
+      params:
+        The return value of :func:`get_params`.
+      model:
+        The training model.
+      optimizer:
+        The optimizer that we are using.
+      scheduler:
+        The learning rate scheduler we are using.
+    Returns:
+      Return None.
+    """
+    if params.start_epoch <= 0:
+        return
+
+    filename = params.exp_dir / f"epoch-{params.start_epoch-1}.pt"
+    saved_params = load_checkpoint(
+        filename,
+        model=model,
+        optimizer=optimizer,
+        scheduler=scheduler,
+    )
+
+    keys = [
+        "best_train_epoch",
+        "best_valid_epoch",
+        "batch_idx_train",
+        "best_train_loss",
+        "best_valid_loss",
+    ]
+    for k in keys:
+        params[k] = saved_params[k]
+
+    return saved_params
+
+
+def save_checkpoint(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: Optional[torch.optim.Optimizer] = None,
+    scheduler: Optional[torch.optim.lr_scheduler._LRScheduler] = None,
+    rank: int = 0,
+) -> None:
+    """Save model, optimizer, scheduler and training stats to file.
+
+    Args:
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The training model.
+    """
+    if rank != 0:
+        return
+    filename = params.exp_dir / f"epoch-{params.cur_epoch}.pt"
+    save_checkpoint_impl(
+        filename=filename,
+        model=model,
+        params=params,
+        optimizer=optimizer,
+        scheduler=scheduler,
+        rank=rank,
+    )
+
+    if params.best_train_epoch == params.cur_epoch:
+        best_train_filename = params.exp_dir / "best-train-loss.pt"
+        copyfile(src=filename, dst=best_train_filename)
+
+    if params.best_valid_epoch == params.cur_epoch:
+        best_valid_filename = params.exp_dir / "best-valid-loss.pt"
+        copyfile(src=filename, dst=best_valid_filename)
+
+
+def compute_loss_impl(
+    params: AttributeDict,
+    model: nn.Module,
+    batch: dict,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    is_training: bool,
+):
+    """
+    Compute CTC loss given the model and its inputs.
+
+    Args:
+      params:
+        Parameters for training. See :func:`get_params`.
+      model:
+        The model for training. It is an instance of Conformer in our case.
+      batch:
+        A batch of data. See `lhotse.dataset.K2SpeechRecognitionDataset()`
+        for the content in it.
+      graph_compiler:
+        It is used to build a decoding graph from a ctc topo and training
+        transcript. The training transcript is contained in the given `batch`,
+        while the ctc topo is built when this compiler is instantiated.
+      is_training:
+        True for training. False for validation. When it is True, this
+        function enables autograd during computation; when it is False, it
+        disables autograd.
+    """
+    device = graph_compiler.device
+    feature = batch["inputs"]
+    # at entry, feature is [N, T, C]
+    assert feature.ndim == 3
+    feature = feature.to(device)
+
+    supervisions = batch["supervisions"]
+    with torch.set_grad_enabled(is_training):
+        nnet_output, encoder_memory, memory_mask = model(feature, supervisions)
+        # nnet_output is [N, T, C]
+
+    # NOTE: We need `encode_supervisions` to sort sequences with
+    # different duration in decreasing order, required by
+    # `k2.intersect_dense` called in `k2.ctc_loss`
+    supervision_segments, texts = encode_supervisions(
+        supervisions, subsampling_factor=params.subsampling_factor
+    )
+
+    token_ids = graph_compiler.texts_to_ids(texts)
+
+    decoding_graph = graph_compiler.compile(token_ids)
+
+    dense_fsa_vec = k2.DenseFsaVec(
+        nnet_output,
+        supervision_segments,
+        allow_truncate=params.subsampling_factor - 1,
+    )
+
+    ctc_loss = k2.ctc_loss(
+        decoding_graph=decoding_graph,
+        dense_fsa_vec=dense_fsa_vec,
+        output_beam=params.beam_size,
+        reduction=params.reduction,
+        use_double_scores=params.use_double_scores,
+    )
+
+    if params.att_rate != 0.0:
+        with torch.set_grad_enabled(is_training):
+            if hasattr(model, "module"):
+                att_loss = model.module.decoder_forward(
+                    encoder_memory,
+                    memory_mask,
+                    token_ids=token_ids,
+                    sos_id=graph_compiler.sos_id,
+                    eos_id=graph_compiler.eos_id,
+                )
+            else:
+                att_loss = model.decoder_forward(
+                    encoder_memory,
+                    memory_mask,
+                    token_ids=token_ids,
+                    sos_id=graph_compiler.sos_id,
+                    eos_id=graph_compiler.eos_id,
+                )
+        loss = (1.0 - params.att_rate) * ctc_loss + params.att_rate * att_loss
+    else:
+        loss = ctc_loss
+        att_loss = torch.tensor([0])
+
+    # train_frames and valid_frames are used for printing.
+    if is_training:
+        params.train_frames = supervision_segments[:, 2].sum().item()
+    else:
+        params.valid_frames = supervision_segments[:, 2].sum().item()
+
+    assert loss.requires_grad == is_training
+
+    return loss, ctc_loss.detach(), att_loss.detach()
+
+
+def compute_loss(
+    params: AttributeDict,
+    model: nn.Module,
+    batch: dict,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    is_training: bool,
+):
+    try:
+        return compute_loss_impl(
+            params=params,
+            model=model,
+            batch=batch,
+            graph_compiler=graph_compiler,
+            is_training=is_training,
+        )
+    except RuntimeError as ex:
+        if "out of memory" not in str(ex):
+            raise ex
+
+        s = f"\nCaught exception: {str(ex)}\n"
+        total_duration = 0.0
+        max_cut_duration = 0.0
+        for cut in batch["supervisions"]["cut"]:
+            s += f" id: {cut.id}, duration: {cut.duration} seconds\n"
+            total_duration += cut.duration
+            max_cut_duration = max(max_cut_duration, cut.duration)
+        s += f" total duration: {total_duration:.3f} s\n"
+        s += f" max duration: {max_cut_duration:.3f} s \n"
+        logging.info(s)
+
+        # see https://github.com/pytorch/fairseq/blob/50a671f78d0c8de0392f924180db72ac9b41b801/fairseq/trainer.py#L283
+        for p in model.parameters():
+            if p.grad is not None:
+                del p.grad  # free some memory
+        torch.cuda.empty_cache()
+
+        return compute_loss_impl(
+            params=params,
+            model=model,
+            batch=params.saved_batch,
+            graph_compiler=graph_compiler,
+            is_training=is_training,
+        )
+
+
+def compute_validation_loss(
+    params: AttributeDict,
+    model: nn.Module,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    valid_dl: torch.utils.data.DataLoader,
+    world_size: int = 1,
+) -> None:
+    """Run the validation process. The validation loss
+    is saved in `params.valid_loss`.
+    """
+    model.eval()
+
+    tot_loss = 0.0
+    tot_ctc_loss = 0.0
+    tot_att_loss = 0.0
+    tot_frames = 0.0
+    for batch_idx, batch in enumerate(valid_dl):
+        loss, ctc_loss, att_loss = compute_loss(
+            params=params,
+            model=model,
+            batch=batch,
+            graph_compiler=graph_compiler,
+            is_training=False,
+        )
+        assert loss.requires_grad is False
+        assert ctc_loss.requires_grad is False
+        assert att_loss.requires_grad is False
+
+        loss_cpu = loss.detach().cpu().item()
+        tot_loss += loss_cpu
+
+        tot_ctc_loss += ctc_loss.detach().cpu().item()
+        tot_att_loss += att_loss.detach().cpu().item()
+
+        tot_frames += params.valid_frames
+
+    if world_size > 1:
+        s = torch.tensor(
+            [tot_loss, tot_ctc_loss, tot_att_loss, tot_frames],
+            device=loss.device,
+        )
+        dist.all_reduce(s, op=dist.ReduceOp.SUM)
+        s = s.cpu().tolist()
+        tot_loss = s[0]
+        tot_ctc_loss = s[1]
+        tot_att_loss = s[2]
+        tot_frames = s[3]
+
+    params.valid_loss = tot_loss / tot_frames
+    params.valid_ctc_loss = tot_ctc_loss / tot_frames
+    params.valid_att_loss = tot_att_loss / tot_frames
+
+    if params.valid_loss < params.best_valid_loss:
+        params.best_valid_epoch = params.cur_epoch
+        params.best_valid_loss = params.valid_loss
+
+
+def train_one_epoch(
+    params: AttributeDict,
+    model: nn.Module,
+    optimizer: torch.optim.Optimizer,
+    graph_compiler: BpeCtcTrainingGraphCompiler,
+    train_dl: torch.utils.data.DataLoader,
+    valid_dl: torch.utils.data.DataLoader,
+    tb_writer: Optional[SummaryWriter] = None,
+    world_size: int = 1,
+) -> None:
+    """Train the model for one epoch.
+
+    The training loss from the mean of all frames is saved in
+    `params.train_loss`. It runs the validation process every
+    `params.valid_interval` batches.
+
+    Args:
+      params:
+        It is returned by :func:`get_params`.
+      model:
+        The model for training.
+      optimizer:
+        The optimizer we are using.
+      graph_compiler:
+        It is used to convert transcripts to FSAs.
+      train_dl:
+        Dataloader for the training dataset.
+      valid_dl:
+        Dataloader for the validation dataset.
+      tb_writer:
+        Writer to write log messages to tensorboard.
+      world_size:
+        Number of nodes in DDP training. If it is 1, DDP is disabled.
+    """
+    model.train()
+
+    tot_loss = 0.0  # sum of losses over all batches
+    tot_ctc_loss = 0.0
+    tot_att_loss = 0.0
+
+    tot_frames = 0.0  # sum of frames over all batches
+    params.tot_loss = 0.0
+    params.tot_frames = 0.0
+    for batch_idx, batch in enumerate(train_dl):
+        if batch_idx == 0:
+            # Use this batch to replace the batch that's causing OOM
+            params.saved_batch = batch
+
+        params.batch_idx_train += 1
+        batch_size = len(batch["supervisions"]["text"])
+
+        loss, ctc_loss, att_loss = compute_loss(
+            params=params,
+            model=model,
+            batch=batch,
+            graph_compiler=graph_compiler,
+            is_training=True,
+        )
+
+        # NOTE: We use reduction==sum and loss is computed over utterances
+        # in the batch and there is no normalization to it so far.
+
+        optimizer.zero_grad()
+        loss.backward()
+        clip_grad_norm_(model.parameters(), 5.0, 2.0)
+        optimizer.step()
+
+        loss_cpu = loss.detach().cpu().item()
+        ctc_loss_cpu = ctc_loss.detach().cpu().item()
+        att_loss_cpu = att_loss.detach().cpu().item()
+
+        tot_frames += params.train_frames
+        tot_loss += loss_cpu
+        tot_ctc_loss += ctc_loss_cpu
+        tot_att_loss += att_loss_cpu
+
+        params.tot_frames += params.train_frames
+        params.tot_loss += loss_cpu
+
+        tot_avg_loss = tot_loss / tot_frames
+        tot_avg_ctc_loss = tot_ctc_loss / tot_frames
+        tot_avg_att_loss = tot_att_loss / tot_frames
+
+        if batch_idx % params.log_interval == 0:
+            total_duration = 0.0
+            max_cut_duration = 0.0
+            for cut in batch["supervisions"]["cut"]:
+                total_duration += cut.duration
+                max_cut_duration = max(max_cut_duration, cut.duration)
+            logging.info(
+                f"Epoch {params.cur_epoch}, batch {batch_idx}, "
+                f"batch avg ctc loss {ctc_loss_cpu/params.train_frames:.4f}, "
+                f"batch avg att loss {att_loss_cpu/params.train_frames:.4f}, "
+                f"batch avg loss {loss_cpu/params.train_frames:.4f}, "
+                f"total avg ctc loss: {tot_avg_ctc_loss:.4f}, "
+                f"total avg att loss: {tot_avg_att_loss:.4f}, "
+                f"total avg loss: {tot_avg_loss:.4f}, "
+                f"batch size: {batch_size}, "
+                f"total duration: {total_duration:.3f} s, "
+                f"max cut duration: {max_cut_duration:.3f} s"
+            )
+
+            if tb_writer is not None:
+                tb_writer.add_scalar(
+                    "train/current_ctc_loss",
+                    ctc_loss_cpu / params.train_frames,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/current_att_loss",
+                    att_loss_cpu / params.train_frames,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/current_loss",
+                    loss_cpu / params.train_frames,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/tot_avg_ctc_loss",
+                    tot_avg_ctc_loss,
+                    params.batch_idx_train,
+                )
+
+                tb_writer.add_scalar(
+                    "train/tot_avg_att_loss",
+                    tot_avg_att_loss,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/tot_avg_loss",
+                    tot_avg_loss,
+                    params.batch_idx_train,
+                )
+        if batch_idx > 0 and batch_idx % params.reset_interval == 0:
+            tot_loss = 0.0  # sum of losses over all batches
+            tot_ctc_loss = 0.0
+            tot_att_loss = 0.0
+
+            tot_frames = 0.0  # sum of frames over all batches
+
+        if batch_idx > 0 and batch_idx % params.valid_interval == 0:
+            compute_validation_loss(
+                params=params,
+                model=model,
+                graph_compiler=graph_compiler,
+                valid_dl=valid_dl,
+                world_size=world_size,
+            )
+            model.train()
+            logging.info(
+                f"Epoch {params.cur_epoch}, "
+                f"valid ctc loss {params.valid_ctc_loss:.4f},"
+                f"valid att loss {params.valid_att_loss:.4f},"
+                f"valid loss {params.valid_loss:.4f},"
+                f" best valid loss: {params.best_valid_loss:.4f} "
+                f"best valid epoch: {params.best_valid_epoch}"
+            )
+            if tb_writer is not None:
+                tb_writer.add_scalar(
+                    "train/valid_ctc_loss",
+                    params.valid_ctc_loss,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/valid_att_loss",
+                    params.valid_att_loss,
+                    params.batch_idx_train,
+                )
+                tb_writer.add_scalar(
+                    "train/valid_loss",
+                    params.valid_loss,
+                    params.batch_idx_train,
+                )
+
+    params.train_loss = params.tot_loss / params.tot_frames
+
+    if params.train_loss < params.best_train_loss:
+        params.best_train_epoch = params.cur_epoch
+        params.best_train_loss = params.train_loss
+
+
+def run(rank, world_size, args):
+    """
+    Args:
+      rank:
+        It is a value between 0 and `world_size-1`, which is
+        passed automatically by `mp.spawn()` in :func:`main`.
+        The node with rank 0 is responsible for saving checkpoint.
+      world_size:
+        Number of GPUs for DDP training.
+      args:
+        The return value of get_parser().parse_args()
+    """
+    params = get_params()
+    params.update(vars(args))
+
+    fix_random_seed(42)
+    if world_size > 1:
+        setup_dist(rank, world_size, params.master_port)
+
+    setup_logger(f"{params.exp_dir}/log/log-train")
+    logging.info("Training started")
+    logging.info(params)
+
+    if args.tensorboard and rank == 0:
+        tb_writer = SummaryWriter(log_dir=f"{params.exp_dir}/tensorboard")
+    else:
+        tb_writer = None
+
+    lexicon = Lexicon(params.lang_dir)
+    max_token_id = max(lexicon.tokens)
+    num_classes = max_token_id + 1  # +1 for the blank
+
+    device = torch.device("cpu")
+    if torch.cuda.is_available():
+        device = torch.device("cuda", rank)
+
+    graph_compiler = BpeCtcTrainingGraphCompiler(
+        params.lang_dir,
+        device=device,
+        sos_token="<sos/eos>",
+        eos_token="<sos/eos>",
+    )
+
+    logging.info("About to create model")
+    model = Conformer(
+        num_features=params.feature_dim,
+        nhead=params.nhead,
+        d_model=params.attention_dim,
+        num_classes=num_classes,
+        subsampling_factor=params.subsampling_factor,
+        num_decoder_layers=params.num_decoder_layers,
+        vgg_frontend=False,
+        is_espnet_structure=params.is_espnet_structure,
+        mmi_loss=params.mmi_loss,
+        use_feat_batchnorm=params.use_feat_batchnorm,
+    )
+
+    checkpoints = load_checkpoint_if_available(params=params, model=model)
+
+    model.to(device)
+    if world_size > 1:
+        model = DDP(model, device_ids=[rank])
+
+    optimizer = Moam(
+        model.parameters(),
+        model_size=params.attention_dim,
+        factor=params.lr_factor,
+        warm_step=params.warm_step,
+    )
+
+    if checkpoints:
+        optimizer.load_state_dict(checkpoints["optimizer"])
+
+    librispeech = LibriSpeechAsrDataModule(args)
+    train_dl = librispeech.train_dataloaders()
+    valid_dl = librispeech.valid_dataloaders()
+
+    for epoch in range(params.start_epoch, params.num_epochs):
+        train_dl.sampler.set_epoch(epoch)
+
+        cur_lr = optimizer._rate
+        if tb_writer is not None:
+            tb_writer.add_scalar(
+                "train/learning_rate", cur_lr, params.batch_idx_train
+            )
+            tb_writer.add_scalar("train/epoch", epoch, params.batch_idx_train)
+
+        if rank == 0:
+            logging.info("epoch {}, learning rate {}".format(epoch, cur_lr))
+
+        params.cur_epoch = epoch
+
+        train_one_epoch(
+            params=params,
+            model=model,
+            optimizer=optimizer,
+            graph_compiler=graph_compiler,
+            train_dl=train_dl,
+            valid_dl=valid_dl,
+            tb_writer=tb_writer,
+            world_size=world_size,
+        )
+        del params.saved_batch
+
+        save_checkpoint(
+            params=params,
+            model=model,
+            optimizer=optimizer,
+            rank=rank,
+        )
+
+    logging.info("Done!")
+
+    if world_size > 1:
+        torch.distributed.barrier()
+        cleanup_dist()
+
+
+def main():
+    parser = get_parser()
+    LibriSpeechAsrDataModule.add_arguments(parser)
+    args = parser.parse_args()
+
+    world_size = args.world_size
+    assert world_size >= 1
+    if world_size > 1:
+        mp.spawn(run, args=(world_size, args), nprocs=world_size, join=True)
+    else:
+        run(rank=0, world_size=1, args=args)
+
+
+torch.set_num_threads(1)
+torch.set_num_interop_threads(1)
+
+if __name__ == "__main__":
+    main()

egs/librispeech/ASR/conformer_ctc_madam_no_warmup/transformer.py

@@ -0,0 +1,993 @@
+# Copyright (c) 2021 University of Chinese Academy of Sciences (author: Han Zhu)
+# Apache 2.0
+
+import math
+from typing import Dict, List, Optional, Tuple
+
+import k2
+import torch
+import torch.nn as nn
+from embedding import Embedding
+from subsampling import Conv2dSubsampling, VggSubsampling
+from torch.nn.utils.rnn import pad_sequence
+
+from icefall.utils import get_texts
+
+# Note: TorchScript requires Dict/List/etc. to be fully typed.
+Supervisions = Dict[str, torch.Tensor]
+
+
+class Transformer(nn.Module):
+    def __init__(
+        self,
+        num_features: int,
+        num_classes: int,
+        subsampling_factor: int = 4,
+        d_model: int = 256,
+        nhead: int = 4,
+        dim_feedforward: int = 2048,
+        num_encoder_layers: int = 12,
+        num_decoder_layers: int = 6,
+        dropout: float = 0.1,
+        normalize_before: bool = True,
+        vgg_frontend: bool = False,
+        mmi_loss: bool = True,
+        use_feat_batchnorm: bool = False,
+    ) -> None:
+        """
+        Args:
+          num_features:
+            The input dimension of the model.
+          num_classes:
+            The output dimension of the model.
+          subsampling_factor:
+            Number of output frames is num_in_frames // subsampling_factor.
+            Currently, subsampling_factor MUST be 4.
+          d_model:
+            Attention dimension.
+          nhead:
+            Number of heads in multi-head attention.
+            Must satisfy d_model // nhead == 0.
+          dim_feedforward:
+            The output dimension of the feedforward layers in encoder/decoder.
+          num_encoder_layers:
+            Number of encoder layers.
+          num_decoder_layers:
+            Number of decoder layers.
+          dropout:
+            Dropout in encoder/decoder.
+          normalize_before:
+            If True, use pre-layer norm; False to use post-layer norm.
+          vgg_frontend:
+            True to use vgg style frontend for subsampling.
+          mmi_loss:
+          use_feat_batchnorm:
+            True to use batchnorm for the input layer.
+        """
+        super().__init__()
+        self.use_feat_batchnorm = use_feat_batchnorm
+        if use_feat_batchnorm:
+            self.feat_batchnorm = nn.BatchNorm1d(num_features)
+
+        self.num_features = num_features
+        self.num_classes = num_classes
+        self.subsampling_factor = subsampling_factor
+        if subsampling_factor != 4:
+            raise NotImplementedError("Support only 'subsampling_factor=4'.")
+
+        # self.encoder_embed converts the input of shape [N, T, num_classes]
+        # to the shape [N, T//subsampling_factor, d_model].
+        # That is, it does two things simultaneously:
+        #   (1) subsampling: T -> T//subsampling_factor
+        #   (2) embedding: num_classes -> d_model
+        if vgg_frontend:
+            self.encoder_embed = VggSubsampling(num_features, d_model)
+        else:
+            self.encoder_embed = Conv2dSubsampling(num_features, d_model)
+
+        self.encoder_pos = PositionalEncoding(d_model, dropout)
+
+        encoder_layer = TransformerEncoderLayer(
+            d_model=d_model,
+            nhead=nhead,
+            dim_feedforward=dim_feedforward,
+            dropout=dropout,
+            normalize_before=normalize_before,
+        )
+
+        if normalize_before:
+            encoder_norm = nn.LayerNorm(d_model)
+        else:
+            encoder_norm = None
+
+        self.encoder = nn.TransformerEncoder(
+            encoder_layer=encoder_layer,
+            num_layers=num_encoder_layers,
+            norm=encoder_norm,
+        )
+
+        # TODO(fangjun): remove dropout
+        self.encoder_output_layer = nn.Sequential(
+            nn.Dropout(p=dropout), nn.Linear(d_model, num_classes)
+        )
+
+        if num_decoder_layers > 0:
+            if mmi_loss:
+                self.decoder_num_class = (
+                    self.num_classes + 1
+                )  # +1 for the sos/eos symbol
+            else:
+                self.decoder_num_class = (
+                    self.num_classes
+                )  # bpe model already has sos/eos symbol
+
+            self.decoder_embed = Embedding(
+                num_embeddings=self.decoder_num_class, embedding_dim=d_model
+            )
+            self.decoder_pos = PositionalEncoding(d_model, dropout)
+
+            decoder_layer = TransformerDecoderLayer(
+                d_model=d_model,
+                nhead=nhead,
+                dim_feedforward=dim_feedforward,
+                dropout=dropout,
+                normalize_before=normalize_before,
+            )
+
+            if normalize_before:
+                decoder_norm = nn.LayerNorm(d_model)
+            else:
+                decoder_norm = None
+
+            self.decoder = nn.TransformerDecoder(
+                decoder_layer=decoder_layer,
+                num_layers=num_decoder_layers,
+                norm=decoder_norm,
+            )
+
+            self.decoder_output_layer = torch.nn.Linear(
+                d_model, self.decoder_num_class
+            )
+
+            self.decoder_criterion = LabelSmoothingLoss(self.decoder_num_class)
+        else:
+            self.decoder_criterion = None
+
+    def forward(
+        self, x: torch.Tensor, supervision: Optional[Supervisions] = None
+    ) -> Tuple[torch.Tensor, torch.Tensor, Optional[torch.Tensor]]:
+        """
+        Args:
+          x:
+            The input tensor. Its shape is [N, T, C].
+          supervision:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            (CAUTION: It contains length information, i.e., start and number of
+             frames, before subsampling)
+
+        Returns:
+          Return a tuple containing 3 tensors:
+            - CTC output for ctc decoding. Its shape is [N, T, C]
+            - Encoder output with shape [T, N, C]. It can be used as key and
+              value for the decoder.
+            - Encoder output padding mask. It can be used as
+              memory_key_padding_mask for the decoder. Its shape is [N, T].
+              It is None if `supervision` is None.
+        """
+        if self.use_feat_batchnorm:
+            x = x.permute(0, 2, 1)  # [N, T, C] -> [N, C, T]
+            x = self.feat_batchnorm(x)
+            x = x.permute(0, 2, 1)  # [N, C, T] -> [N, T, C]
+        encoder_memory, memory_key_padding_mask = self.run_encoder(
+            x, supervision
+        )
+        x = self.ctc_output(encoder_memory)
+        return x, encoder_memory, memory_key_padding_mask
+
+    def run_encoder(
+        self, x: torch.Tensor, supervisions: Optional[Supervisions] = None
+    ) -> Tuple[torch.Tensor, Optional[torch.Tensor]]:
+        """Run the transformer encoder.
+
+        Args:
+          x:
+            The model input. Its shape is [N, T, C].
+          supervisions:
+            Supervision in lhotse format.
+            See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+            CAUTION: It contains length information, i.e., start and number of
+            frames, before subsampling
+            It is read directly from the batch, without any sorting. It is used
+            to compute the encoder padding mask, which is used as memory key
+            padding mask for the decoder.
+        Returns:
+          Return a tuple with two tensors:
+            - The encoder output, with shape [T, N, C]
+            - encoder padding mask, with shape [N, T].
+              The mask is None if `supervisions` is None.
+              It is used as memory key padding mask in the decoder.
+        """
+        x = self.encoder_embed(x)
+        x = self.encoder_pos(x)
+        x = x.permute(1, 0, 2)  # (N, T, C) -> (T, N, C)
+        mask = encoder_padding_mask(x.size(0), supervisions)
+        mask = mask.to(x.device) if mask is not None else None
+        x = self.encoder(x, src_key_padding_mask=mask)  # (T, N, C)
+
+        return x, mask
+
+    def ctc_output(self, x: torch.Tensor) -> torch.Tensor:
+        """
+        Args:
+          x:
+            The output tensor from the transformer encoder.
+            Its shape is [T, N, C]
+
+        Returns:
+          Return a tensor that can be used for CTC decoding.
+          Its shape is [N, T, C]
+        """
+        x = self.encoder_output_layer(x)
+        x = x.permute(1, 0, 2)  # (T, N, C) ->(N, T, C)
+        x = nn.functional.log_softmax(x, dim=-1)  # (N, T, C)
+        return x
+
+    def decoder_forward(
+        self,
+        memory: torch.Tensor,
+        memory_key_padding_mask: torch.Tensor,
+        token_ids: List[List[int]],
+        sos_id: int,
+        eos_id: int,
+    ) -> torch.Tensor:
+        """
+        Args:
+          memory:
+            It's the output of the encoder with shape [T, N, C]
+          memory_key_padding_mask:
+            The padding mask from the encoder.
+          token_ids:
+            A list-of-list IDs. Each sublist contains IDs for an utterance.
+            The IDs can be either phone IDs or word piece IDs.
+          sos_id:
+            sos token id
+          eos_id:
+            eos token id
+
+        Returns:
+            A scalar, the **sum** of label smoothing loss over utterances
+            in the batch without any normalization.
+        """
+        ys_in = add_sos(token_ids, sos_id=sos_id)
+        ys_in = [torch.tensor(y) for y in ys_in]
+        ys_in_pad = pad_sequence(ys_in, batch_first=True, padding_value=eos_id)
+
+        ys_out = add_eos(token_ids, eos_id=eos_id)
+        ys_out = [torch.tensor(y) for y in ys_out]
+        ys_out_pad = pad_sequence(ys_out, batch_first=True, padding_value=-1)
+
+        device = memory.device
+        ys_in_pad = ys_in_pad.to(device)
+        ys_out_pad = ys_out_pad.to(device)
+
+        tgt_mask = generate_square_subsequent_mask(ys_in_pad.shape[-1]).to(
+            device
+        )
+
+        tgt_key_padding_mask = decoder_padding_mask(ys_in_pad, ignore_id=eos_id)
+        # TODO: Use length information to create the decoder padding mask
+        # We set the first column to False since the first column in ys_in_pad
+        # contains sos_id, which is the same as eos_id in our current setting.
+        tgt_key_padding_mask[:, 0] = False
+
+        tgt = self.decoder_embed(ys_in_pad)  # (N, T) -> (N, T, C)
+        tgt = self.decoder_pos(tgt)
+        tgt = tgt.permute(1, 0, 2)  # (N, T, C) -> (T, N, C)
+        pred_pad = self.decoder(
+            tgt=tgt,
+            memory=memory,
+            tgt_mask=tgt_mask,
+            tgt_key_padding_mask=tgt_key_padding_mask,
+            memory_key_padding_mask=memory_key_padding_mask,
+        )  # (T, N, C)
+        pred_pad = pred_pad.permute(1, 0, 2)  # (T, N, C) -> (N, T, C)
+        pred_pad = self.decoder_output_layer(pred_pad)  # (N, T, C)
+
+        decoder_loss = self.decoder_criterion(pred_pad, ys_out_pad)
+
+        return decoder_loss
+
+    def decoder_nll(
+        self,
+        memory: torch.Tensor,
+        memory_key_padding_mask: torch.Tensor,
+        token_ids: List[List[int]],
+        sos_id: int,
+        eos_id: int,
+    ) -> torch.Tensor:
+        """
+        Args:
+          memory:
+            It's the output of the encoder with shape [T, N, C]
+          memory_key_padding_mask:
+            The padding mask from the encoder.
+          token_ids:
+            A list-of-list IDs (e.g., word piece IDs).
+            Each sublist represents an utterance.
+          sos_id:
+            The token ID for SOS.
+          eos_id:
+            The token ID for EOS.
+        Returns:
+            A 2-D tensor of shape (len(token_ids), max_token_length)
+            representing the cross entropy loss (i.e., negative log-likelihood).
+        """
+        # The common part between this function and decoder_forward could be
+        # extracted as a separate function.
+
+        ys_in = add_sos(token_ids, sos_id=sos_id)
+        ys_in = [torch.tensor(y) for y in ys_in]
+        ys_in_pad = pad_sequence(ys_in, batch_first=True, padding_value=eos_id)
+
+        ys_out = add_eos(token_ids, eos_id=eos_id)
+        ys_out = [torch.tensor(y) for y in ys_out]
+        ys_out_pad = pad_sequence(ys_out, batch_first=True, padding_value=-1)
+
+        device = memory.device
+        ys_in_pad = ys_in_pad.to(device, dtype=torch.int64)
+        ys_out_pad = ys_out_pad.to(device, dtype=torch.int64)
+
+        tgt_mask = generate_square_subsequent_mask(ys_in_pad.shape[-1]).to(
+            device
+        )
+
+        tgt_key_padding_mask = decoder_padding_mask(ys_in_pad, ignore_id=eos_id)
+        # TODO: Use length information to create the decoder padding mask
+        # We set the first column to False since the first column in ys_in_pad
+        # contains sos_id, which is the same as eos_id in our current setting.
+        tgt_key_padding_mask[:, 0] = False
+
+        tgt = self.decoder_embed(ys_in_pad)  # (B, T) -> (B, T, F)
+        tgt = self.decoder_pos(tgt)
+        tgt = tgt.permute(1, 0, 2)  # (B, T, F) -> (T, B, F)
+        pred_pad = self.decoder(
+            tgt=tgt,
+            memory=memory,
+            tgt_mask=tgt_mask,
+            tgt_key_padding_mask=tgt_key_padding_mask,
+            memory_key_padding_mask=memory_key_padding_mask,
+        )  # (T, B, F)
+        pred_pad = pred_pad.permute(1, 0, 2)  # (T, B, F) -> (B, T, F)
+        pred_pad = self.decoder_output_layer(pred_pad)  # (B, T, F)
+        # nll: negative log-likelihood
+        nll = torch.nn.functional.cross_entropy(
+            pred_pad.view(-1, self.decoder_num_class),
+            ys_out_pad.view(-1),
+            ignore_index=-1,
+            reduction="none",
+        )
+
+        nll = nll.view(pred_pad.shape[0], -1)
+
+        return nll
+
+
+class TransformerEncoderLayer(nn.Module):
+    """
+    Modified from torch.nn.TransformerEncoderLayer.
+    Add support of normalize_before,
+    i.e., use layer_norm before the first block.
+
+    Args:
+      d_model:
+        the number of expected features in the input (required).
+      nhead:
+        the number of heads in the multiheadattention models (required).
+      dim_feedforward:
+        the dimension of the feedforward network model (default=2048).
+      dropout:
+        the dropout value (default=0.1).
+      activation:
+        the activation function of intermediate layer, relu or
+        gelu (default=relu).
+      normalize_before:
+        whether to use layer_norm before the first block.
+
+    Examples::
+        >>> encoder_layer = TransformerEncoderLayer(d_model=512, nhead=8)
+        >>> src = torch.rand(10, 32, 512)
+        >>> out = encoder_layer(src)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        activation: str = "relu",
+        normalize_before: bool = True,
+    ) -> None:
+        super(TransformerEncoderLayer, self).__init__()
+        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        # Implementation of Feedforward model
+        self.linear1 = nn.Linear(d_model, dim_feedforward)
+        self.dropout = nn.Dropout(dropout)
+        self.linear2 = nn.Linear(dim_feedforward, d_model)
+
+        self.norm1 = nn.LayerNorm(d_model)
+        self.norm2 = nn.LayerNorm(d_model)
+        self.dropout1 = nn.Dropout(dropout)
+        self.dropout2 = nn.Dropout(dropout)
+
+        self.activation = _get_activation_fn(activation)
+
+        self.normalize_before = normalize_before
+
+    def __setstate__(self, state):
+        if "activation" not in state:
+            state["activation"] = nn.functional.relu
+        super(TransformerEncoderLayer, self).__setstate__(state)
+
+    def forward(
+        self,
+        src: torch.Tensor,
+        src_mask: Optional[torch.Tensor] = None,
+        src_key_padding_mask: Optional[torch.Tensor] = None,
+    ) -> torch.Tensor:
+        """
+        Pass the input through the encoder layer.
+
+        Args:
+            src: the sequence to the encoder layer (required).
+            src_mask: the mask for the src sequence (optional).
+            src_key_padding_mask: the mask for the src keys per batch (optional)
+
+        Shape:
+            src: (S, N, E).
+            src_mask: (S, S).
+            src_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length,
+            N is the batch size, E is the feature number
+        """
+        residual = src
+        if self.normalize_before:
+            src = self.norm1(src)
+        src2 = self.self_attn(
+            src,
+            src,
+            src,
+            attn_mask=src_mask,
+            key_padding_mask=src_key_padding_mask,
+        )[0]
+        src = residual + self.dropout1(src2)
+        if not self.normalize_before:
+            src = self.norm1(src)
+
+        residual = src
+        if self.normalize_before:
+            src = self.norm2(src)
+        src2 = self.linear2(self.dropout(self.activation(self.linear1(src))))
+        src = residual + self.dropout2(src2)
+        if not self.normalize_before:
+            src = self.norm2(src)
+        return src
+
+
+class TransformerDecoderLayer(nn.Module):
+    """
+    Modified from torch.nn.TransformerDecoderLayer.
+    Add support of normalize_before,
+    i.e., use layer_norm before the first block.
+
+    Args:
+      d_model:
+        the number of expected features in the input (required).
+      nhead:
+        the number of heads in the multiheadattention models (required).
+      dim_feedforward:
+        the dimension of the feedforward network model (default=2048).
+      dropout:
+        the dropout value (default=0.1).
+      activation:
+        the activation function of intermediate layer, relu or
+        gelu (default=relu).
+
+    Examples::
+        >>> decoder_layer = nn.TransformerDecoderLayer(d_model=512, nhead=8)
+        >>> memory = torch.rand(10, 32, 512)
+        >>> tgt = torch.rand(20, 32, 512)
+        >>> out = decoder_layer(tgt, memory)
+    """
+
+    def __init__(
+        self,
+        d_model: int,
+        nhead: int,
+        dim_feedforward: int = 2048,
+        dropout: float = 0.1,
+        activation: str = "relu",
+        normalize_before: bool = True,
+    ) -> None:
+        super(TransformerDecoderLayer, self).__init__()
+        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        self.src_attn = nn.MultiheadAttention(d_model, nhead, dropout=0.0)
+        # Implementation of Feedforward model
+        self.linear1 = nn.Linear(d_model, dim_feedforward)
+        self.dropout = nn.Dropout(dropout)
+        self.linear2 = nn.Linear(dim_feedforward, d_model)
+
+        self.norm1 = nn.LayerNorm(d_model)
+        self.norm2 = nn.LayerNorm(d_model)
+        self.norm3 = nn.LayerNorm(d_model)
+        self.dropout1 = nn.Dropout(dropout)
+        self.dropout2 = nn.Dropout(dropout)
+        self.dropout3 = nn.Dropout(dropout)
+
+        self.activation = _get_activation_fn(activation)
+
+        self.normalize_before = normalize_before
+
+    def __setstate__(self, state):
+        if "activation" not in state:
+            state["activation"] = nn.functional.relu
+        super(TransformerDecoderLayer, self).__setstate__(state)
+
+    def forward(
+        self,
+        tgt: torch.Tensor,
+        memory: torch.Tensor,
+        tgt_mask: Optional[torch.Tensor] = None,
+        memory_mask: Optional[torch.Tensor] = None,
+        tgt_key_padding_mask: Optional[torch.Tensor] = None,
+        memory_key_padding_mask: Optional[torch.Tensor] = None,
+    ) -> torch.Tensor:
+        """Pass the inputs (and mask) through the decoder layer.
+
+        Args:
+          tgt:
+            the sequence to the decoder layer (required).
+          memory:
+            the sequence from the last layer of the encoder (required).
+          tgt_mask:
+            the mask for the tgt sequence (optional).
+          memory_mask:
+            the mask for the memory sequence (optional).
+          tgt_key_padding_mask:
+            the mask for the tgt keys per batch (optional).
+          memory_key_padding_mask:
+            the mask for the memory keys per batch (optional).
+
+        Shape:
+            tgt: (T, N, E).
+            memory: (S, N, E).
+            tgt_mask: (T, T).
+            memory_mask: (T, S).
+            tgt_key_padding_mask: (N, T).
+            memory_key_padding_mask: (N, S).
+            S is the source sequence length, T is the target sequence length,
+            N is the batch size, E is the feature number
+        """
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm1(tgt)
+        tgt2 = self.self_attn(
+            tgt,
+            tgt,
+            tgt,
+            attn_mask=tgt_mask,
+            key_padding_mask=tgt_key_padding_mask,
+        )[0]
+        tgt = residual + self.dropout1(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm1(tgt)
+
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm2(tgt)
+        tgt2 = self.src_attn(
+            tgt,
+            memory,
+            memory,
+            attn_mask=memory_mask,
+            key_padding_mask=memory_key_padding_mask,
+        )[0]
+        tgt = residual + self.dropout2(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm2(tgt)
+
+        residual = tgt
+        if self.normalize_before:
+            tgt = self.norm3(tgt)
+        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt))))
+        tgt = residual + self.dropout3(tgt2)
+        if not self.normalize_before:
+            tgt = self.norm3(tgt)
+        return tgt
+
+
+def _get_activation_fn(activation: str):
+    if activation == "relu":
+        return nn.functional.relu
+    elif activation == "gelu":
+        return nn.functional.gelu
+
+    raise RuntimeError(
+        "activation should be relu/gelu, not {}".format(activation)
+    )
+
+
+class PositionalEncoding(nn.Module):
+    """This class implements the positional encoding
+    proposed in the following paper:
+
+    - Attention Is All You Need: https://arxiv.org/pdf/1706.03762.pdf
+
+        PE(pos, 2i) = sin(pos / (10000^(2i/d_modle))
+        PE(pos, 2i+1) = cos(pos / (10000^(2i/d_modle))
+
+    Note::
+
+      1 / (10000^(2i/d_model)) = exp(-log(10000^(2i/d_model)))
+                               = exp(-1* 2i / d_model * log(100000))
+                               = exp(2i * -(log(10000) / d_model))
+    """
+
+    def __init__(self, d_model: int, dropout: float = 0.1) -> None:
+        """
+        Args:
+          d_model:
+            Embedding dimension.
+          dropout:
+            Dropout probability to be applied to the output of this module.
+        """
+        super().__init__()
+        self.d_model = d_model
+        self.pos_scale = 1.0 / math.sqrt(self.d_model)
+        self.dropout = nn.Dropout(p=dropout)
+        self.pe = None
+
+    def extend_pe(self, x: torch.Tensor) -> None:
+        """Extend the time t in the positional encoding if required.
+
+        The shape of `self.pe` is [1, T1, d_model]. The shape of the input x
+        is [N, T, d_model]. If T > T1, then we change the shape of self.pe
+        to [N, T, d_model]. Otherwise, nothing is done.
+
+        Args:
+          x:
+            It is a tensor of shape [N, T, C].
+        Returns:
+          Return None.
+        """
+        if self.pe is not None:
+            if self.pe.size(1) >= x.size(1):
+                if self.pe.dtype != x.dtype or self.pe.device != x.device:
+                    self.pe = self.pe.to(dtype=x.dtype, device=x.device)
+                return
+        pe = torch.zeros(x.size(1), self.d_model, dtype=torch.float32)
+        position = torch.arange(0, x.size(1), dtype=torch.float32).unsqueeze(1)
+        div_term = torch.exp(
+            torch.arange(0, self.d_model, 2, dtype=torch.float32)
+            * -(math.log(10000.0) / self.d_model)
+        )
+        pe[:, 0::2] = torch.sin(position * div_term)
+        pe[:, 1::2] = torch.cos(position * div_term)
+        pe = pe.unsqueeze(0)
+        # Now pe is of shape [1, T, d_model], where T is x.size(1)
+        self.pe = pe.to(device=x.device, dtype=x.dtype)
+
+    def forward(self, x: torch.Tensor) -> torch.Tensor:
+        """
+        Add positional encoding.
+
+        Args:
+          x:
+            Its shape is [N, T, C]
+
+        Returns:
+          Return a tensor of shape [N, T, C]
+        """
+        self.extend_pe(x)
+        x = x + self.pe[:, : x.size(1), :] * self.pos_scale
+        return self.dropout(x)
+
+
+class Noam(object):
+    """
+    Implements Noam optimizer.
+
+    Proposed in
+    "Attention Is All You Need", https://arxiv.org/pdf/1706.03762.pdf
+
+    Modified from
+    https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/optimizer.py  # noqa
+
+    Args:
+      params:
+        iterable of parameters to optimize or dicts defining parameter groups
+      model_size:
+        attention dimension of the transformer model
+      factor:
+        learning rate factor
+      warm_step:
+        warmup steps
+    """
+
+    def __init__(
+        self,
+        params,
+        model_size: int = 256,
+        factor: float = 10.0,
+        warm_step: int = 25000,
+        weight_decay=0,
+    ) -> None:
+        """Construct an Noam object."""
+        self.optimizer = torch.optim.Adam(
+            params, lr=0, betas=(0.9, 0.98), eps=1e-9, weight_decay=weight_decay
+        )
+        self._step = 0
+        self.warmup = warm_step
+        self.factor = factor
+        self.model_size = model_size
+        self._rate = 0
+
+    @property
+    def param_groups(self):
+        """Return param_groups."""
+        return self.optimizer.param_groups
+
+    def step(self):
+        """Update parameters and rate."""
+        self._step += 1
+        rate = self.rate()
+        for p in self.optimizer.param_groups:
+            p["lr"] = rate
+        self._rate = rate
+        self.optimizer.step()
+
+    def rate(self, step=None):
+        """Implement `lrate` above."""
+        if step is None:
+            step = self._step
+        return (
+            self.factor
+            * self.model_size ** (-0.5)
+            * min(step ** (-0.5), step * self.warmup ** (-1.5))
+        )
+
+    def zero_grad(self):
+        """Reset gradient."""
+        self.optimizer.zero_grad()
+
+    def state_dict(self):
+        """Return state_dict."""
+        return {
+            "_step": self._step,
+            "warmup": self.warmup,
+            "factor": self.factor,
+            "model_size": self.model_size,
+            "_rate": self._rate,
+            "optimizer": self.optimizer.state_dict(),
+        }
+
+    def load_state_dict(self, state_dict):
+        """Load state_dict."""
+        for key, value in state_dict.items():
+            if key == "optimizer":
+                self.optimizer.load_state_dict(state_dict["optimizer"])
+            else:
+                setattr(self, key, value)
+
+
+class LabelSmoothingLoss(nn.Module):
+    """
+    Label-smoothing loss. KL-divergence between q_{smoothed ground truth prob.}(w)
+    and p_{prob. computed by model}(w) is minimized.
+    Modified from
+    https://github.com/espnet/espnet/blob/master/espnet/nets/pytorch_backend/transformer/label_smoothing_loss.py  # noqa
+
+    Args:
+        size: the number of class
+        padding_idx: padding_idx: ignored class id
+        smoothing: smoothing rate (0.0 means the conventional CE)
+        normalize_length: normalize loss by sequence length if True
+        criterion: loss function to be smoothed
+    """
+
+    def __init__(
+        self,
+        size: int,
+        padding_idx: int = -1,
+        smoothing: float = 0.1,
+        normalize_length: bool = False,
+        criterion: nn.Module = nn.KLDivLoss(reduction="none"),
+    ) -> None:
+        """Construct an LabelSmoothingLoss object."""
+        super(LabelSmoothingLoss, self).__init__()
+        self.criterion = criterion
+        self.padding_idx = padding_idx
+        assert 0.0 < smoothing <= 1.0
+        self.confidence = 1.0 - smoothing
+        self.smoothing = smoothing
+        self.size = size
+        self.true_dist = None
+        self.normalize_length = normalize_length
+
+    def forward(self, x: torch.Tensor, target: torch.Tensor) -> torch.Tensor:
+        """
+        Compute loss between x and target.
+
+        Args:
+          x:
+            prediction of dimension
+            (batch_size, input_length, number_of_classes).
+          target:
+            target masked with self.padding_id of
+            dimension (batch_size, input_length).
+
+        Returns:
+          A scalar tensor containing the loss without normalization.
+        """
+        assert x.size(2) == self.size
+        #  batch_size = x.size(0)
+        x = x.view(-1, self.size)
+        target = target.view(-1)
+        with torch.no_grad():
+            true_dist = x.clone()
+            true_dist.fill_(self.smoothing / (self.size - 1))
+            ignore = target == self.padding_idx  # (B,)
+            total = len(target) - ignore.sum().item()
+            target = target.masked_fill(ignore, 0)  # avoid -1 index
+            true_dist.scatter_(1, target.unsqueeze(1), self.confidence)
+        kl = self.criterion(torch.log_softmax(x, dim=1), true_dist)
+        #  denom = total if self.normalize_length else batch_size
+        denom = total if self.normalize_length else 1
+        return kl.masked_fill(ignore.unsqueeze(1), 0).sum() / denom
+
+
+def encoder_padding_mask(
+    max_len: int, supervisions: Optional[Supervisions] = None
+) -> Optional[torch.Tensor]:
+    """Make mask tensor containing indexes of padded part.
+
+    TODO::
+      This function **assumes** that the model uses
+      a subsampling factor of 4. We should remove that
+      assumption later.
+
+    Args:
+      max_len:
+        Maximum length of input features.
+        CAUTION: It is the length after subsampling.
+      supervisions:
+        Supervision in lhotse format.
+        See https://github.com/lhotse-speech/lhotse/blob/master/lhotse/dataset/speech_recognition.py#L32  # noqa
+        (CAUTION: It contains length information, i.e., start and number of
+         frames, before subsampling)
+
+    Returns:
+        Tensor: Mask tensor of dimension (batch_size, input_length), True denote the masked indices.
+    """
+    if supervisions is None:
+        return None
+
+    supervision_segments = torch.stack(
+        (
+            supervisions["sequence_idx"],
+            supervisions["start_frame"],
+            supervisions["num_frames"],
+        ),
+        1,
+    ).to(torch.int32)
+
+    lengths = [
+        0 for _ in range(int(supervision_segments[:, 0].max().item()) + 1)
+    ]
+    for idx in range(supervision_segments.size(0)):
+        # Note: TorchScript doesn't allow to unpack tensors as tuples
+        sequence_idx = supervision_segments[idx, 0].item()
+        start_frame = supervision_segments[idx, 1].item()
+        num_frames = supervision_segments[idx, 2].item()
+        lengths[sequence_idx] = start_frame + num_frames
+
+    lengths = [((i - 1) // 2 - 1) // 2 for i in lengths]
+    bs = int(len(lengths))
+    seq_range = torch.arange(0, max_len, dtype=torch.int64)
+    seq_range_expand = seq_range.unsqueeze(0).expand(bs, max_len)
+    # Note: TorchScript doesn't implement Tensor.new()
+    seq_length_expand = torch.tensor(
+        lengths, device=seq_range_expand.device, dtype=seq_range_expand.dtype
+    ).unsqueeze(-1)
+    mask = seq_range_expand >= seq_length_expand
+
+    return mask
+
+
+def decoder_padding_mask(
+    ys_pad: torch.Tensor, ignore_id: int = -1
+) -> torch.Tensor:
+    """Generate a length mask for input.
+
+    The masked position are filled with True,
+    Unmasked positions are filled with False.
+
+    Args:
+      ys_pad:
+        padded tensor of dimension (batch_size, input_length).
+      ignore_id:
+        the ignored number (the padding number) in ys_pad
+
+    Returns:
+      Tensor:
+        a bool tensor of the same shape as the input tensor.
+    """
+    ys_mask = ys_pad == ignore_id
+    return ys_mask
+
+
+def generate_square_subsequent_mask(sz: int) -> torch.Tensor:
+    """Generate a square mask for the sequence. The masked positions are
+    filled with float('-inf'). Unmasked positions are filled with float(0.0).
+    The mask can be used for masked self-attention.
+
+    For instance, if sz is 3, it returns::
+
+        tensor([[0., -inf, -inf],
+                [0., 0., -inf],
+                [0., 0., 0]])
+
+    Args:
+      sz: mask size
+
+    Returns:
+      A square mask of dimension (sz, sz)
+    """
+    mask = (torch.triu(torch.ones(sz, sz)) == 1).transpose(0, 1)
+    mask = (
+        mask.float()
+        .masked_fill(mask == 0, float("-inf"))
+        .masked_fill(mask == 1, float(0.0))
+    )
+    return mask
+
+
+def add_sos(token_ids: List[List[int]], sos_id: int) -> List[List[int]]:
+    """Prepend sos_id to each utterance.
+
+    Args:
+      token_ids:
+        A list-of-list of token IDs. Each sublist contains
+        token IDs (e.g., word piece IDs) of an utterance.
+      sos_id:
+        The ID of the SOS token.
+
+    Return:
+      Return a new list-of-list, where each sublist starts
+      with SOS ID.
+    """
+    ans = []
+    for utt in token_ids:
+        ans.append([sos_id] + utt)
+    return ans
+
+
+def add_eos(token_ids: List[List[int]], eos_id: int) -> List[List[int]]:
+    """Append eos_id to each utterance.
+
+    Args:
+      token_ids:
+        A list-of-list of token IDs. Each sublist contains
+        token IDs (e.g., word piece IDs) of an utterance.
+      eos_id:
+        The ID of the EOS token.
+
+    Return:
+      Return a new list-of-list, where each sublist ends
+      with EOS ID.
+    """
+    ans = []
+    for utt in token_ids:
+        ans.append(utt + [eos_id])
+    return ans

icefall/dataset/asr_datamodule.py

@@ -138,7 +138,7 @@ class AsrDataModule(DataModule):
         ]
 
         train = K2SpeechRecognitionDataset(
-            cuts_train,
+            return_cuts=True,
             cut_transforms=transforms,
             input_transforms=input_transforms,
         )
@@ -171,6 +171,8 @@ class AsrDataModule(DataModule):
                 max_duration=self.args.max_duration,
                 shuffle=True,
                 num_buckets=self.args.num_buckets,
+                drop_last=True,
+                bucket_method="equal_duration",
             )
         else:
             logging.info("Using SingleCutSampler.")
@@ -184,8 +186,8 @@ class AsrDataModule(DataModule):
             train,
             sampler=train_sampler,
             batch_size=None,
-            num_workers=4,
-            persistent_workers=True,
+            num_workers=2,
+            persistent_workers=False,
         )
         return train_dl